SNP Panels — Functional Mapping

These files contain the chromosomal mapping of SNPs found on various commercial SNP panels offered through Affymetrix and Illumina. The SNP rsIDs are taken from Affymetrix and Illumina files. The remaining annotation columns are extracted from the GVS database (see this description for build 127). If the file name does not contain a chromosome number, the file has data for all chromosomes in it. For each SNP in these panels, the files contain:

fxnMapping-Affy100K (hg17, dbSNP build 125)

Affy100K.fxnMapping.out.gz
chr1.Affy100.fxnMapping.out.gz
chr2.Affy100.fxnMapping.out.gz
chr3.Affy100.fxnMapping.out.gz
chr4.Affy100.fxnMapping.out.gz
chr5.Affy100.fxnMapping.out.gz
chr6.Affy100.fxnMapping.out.gz
chr7.Affy100.fxnMapping.out.gz
chr8.Affy100.fxnMapping.out.gz
chr9.Affy100.fxnMapping.out.gz
chr10.Affy100.fxnMapping.out.gz
chr11.Affy100.fxnMapping.out.gz
chr12.Affy100.fxnMapping.out.gz
chr13.Affy100.fxnMapping.out.gz
chr14.Affy100.fxnMapping.out.gz
chr15.Affy100.fxnMapping.out.gz
chr16.Affy100.fxnMapping.out.gz
chr17.Affy100.fxnMapping.out.gz
chr18.Affy100.fxnMapping.out.gz
chr19.Affy100.fxnMapping.out.gz
chr20.Affy100.fxnMapping.out.gz
chr21.Affy100.fxnMapping.out.gz
chr22.Affy100.fxnMapping.out.gz
chrX.Affy100.fxnMapping.out.gz

fxnMapping-Affy500K (hg17, dbSNP build 125)

Affy500.fxnMapping.out.gz
chr1.Affy500.fxnMapping.out.gz
chr2.Affy500.fxnMapping.out.gz
chr3.Affy500.fxnMapping.out.gz
chr4.Affy500.fxnMapping.out.gz
chr5.Affy500.fxnMapping.out.gz
chr6.Affy500.fxnMapping.out.gz
chr7.Affy500.fxnMapping.out.gz
chr8.Affy500.fxnMapping.out.gz
chr9.Affy500.fxnMapping.out.gz
chr10.Affy500.fxnMapping.out.gz
chr11.Affy500.fxnMapping.out.gz
chr12.Affy500.fxnMapping.out.gz
chr13.Affy500.fxnMapping.out.gz
chr14.Affy500.fxnMapping.out.gz
chr15.Affy500.fxnMapping.out.gz
chr16.Affy500.fxnMapping.out.gz
chr17.Affy500.fxnMapping.out.gz
chr18.Affy500.fxnMapping.out.gz
chr19.Affy500.fxnMapping.out.gz
chr20.Affy500.fxnMapping.out.gz
chr21.Affy500.fxnMapping.out.gz
chr22.Affy500.fxnMapping.out.gz
chrX.Affy500.fxnMapping.out.gz

fxnMapping-Illumina100K (hg17, dbSNP build 125)

HumanHap100.fxnMapping.out.gz
chr1.HumanHap100.fxnMapping.out.gz
chr2.HumanHap100.fxnMapping.out.gz
chr3.HumanHap100.fxnMapping.out.gz
chr4.HumanHap100.fxnMapping.out.gz
chr5.HumanHap100.fxnMapping.out.gz
chr6.HumanHap100.fxnMapping.out.gz
chr7.HumanHap100.fxnMapping.out.gz
chr8.HumanHap100.fxnMapping.out.gz
chr9.HumanHap100.fxnMapping.out.gz
chr10.HumanHap100.fxnMapping.out.gz
chr11.HumanHap100.fxnMapping.out.gz
chr12.HumanHap100.fxnMapping.out.gz
chr13.HumanHap100.fxnMapping.out.gz
chr14.HumanHap100.fxnMapping.out.gz
chr15.HumanHap100.fxnMapping.out.gz
chr16.HumanHap100.fxnMapping.out.gz
chr17.HumanHap100.fxnMapping.out.gz
chr18.HumanHap100.fxnMapping.out.gz
chr19.HumanHap100.fxnMapping.out.gz
chr20.HumanHap100.fxnMapping.out.gz
chr21.HumanHap100.fxnMapping.out.gz
chr22.HumanHap100.fxnMapping.out.gz
chrX.HumanHap100.fxnMapping.out.gz
chrY.HumanHap100.fxnMapping.out.gz

fxnMapping-Illumina300K (hg17, dbSNP build 125)

HumanHap300.fxnMapping.out.gz
chr1.HumanHap300.fxnMapping.out.gz
chr2.HumanHap300.fxnMapping.out.gz
chr3.HumanHap300.fxnMapping.out.gz
chr4.HumanHap300.fxnMapping.out.gz
chr5.HumanHap300.fxnMapping.out.gz
chr6.HumanHap300.fxnMapping.out.gz
chr7.HumanHap300.fxnMapping.out.gz
chr8.HumanHap300.fxnMapping.out.gz
chr9.HumanHap300.fxnMapping.out.gz
chr10.HumanHap300.fxnMapping.out.gz
chr11.HumanHap300.fxnMapping.out.gz
chr12.HumanHap300.fxnMapping.out.gz
chr13.HumanHap300.fxnMapping.out.gz
chr14.HumanHap300.fxnMapping.out.gz
chr15.HumanHap300.fxnMapping.out.gz
chr16.HumanHap300.fxnMapping.out.gz
chr17.HumanHap300.fxnMapping.out.gz
chr18.HumanHap300.fxnMapping.out.gz
chr19.HumanHap300.fxnMapping.out.gz
chr20.HumanHap300.fxnMapping.out.gz
chr21.HumanHap300.fxnMapping.out.gz
chr22.HumanHap300.fxnMapping.out.gz
chrX.HumanHap300.fxnMapping.out.gz
SnpFxnMapping-Illumina300K.jar (for internal use)

fxnMapping-Illumina300K (hg18, dbSNP build 127)

chrAll.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr1.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr2.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr3.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr4.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr5.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr6.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr7.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr8.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr9.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr10.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr11.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr12.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr13.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr14.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr15.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr16.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr17.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr18.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr19.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr20.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr21.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chr22.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chrX.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
chrY.ILMN_HumanHap300.hg18.dbSNP127.fxnMapping.out.gz
SnpFxnMapping.jar (for internal use)

fxnMapping-Illumina550K (hg18, dbSNP build 126)

chrAll.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr1.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr2.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr3.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr4.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr5.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr6.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr7.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr8.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr9.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr10.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr11.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr12.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr13.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr14.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr15.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr16.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr17.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr18.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr19.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr20.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr21.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chr22.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chrX.ILMN_HumanHap550.hg18.fxnMapping.out.gz
chrY.ILMN_HumanHap550.hg18.fxnMapping.out.gz
SnpFxnMapping-Illumina550K.jar (for internal use)

fxnMapping-Illumina1M (hg18, dbSNP build 127)

chrAll.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr1.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr2.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr3.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr4.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr5.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr6.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr7.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr8.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr9.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr10.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr11.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr12.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr13.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr14.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr15.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr16.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr17.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr18.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr19.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr20.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr21.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chr22.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chrX.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
chrY.ILMN_Human1M.hg18.dbSNP127.fxnMapping.out.gz
SnpFxnMapping.jar (for internal use)