LOCUS AY100524 3319 bp DNA linear PRI 15-JUN-2002 DEFINITION Homo sapiens apolipoprotein AII (APOA2) gene, complete cds. ACCESSION AY100524 VERSION AY100524.1 GI:21429230 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3319) AUTHORS Fullerton,S.M., Clark,A.G., Weiss,K.M., Taylor,S.L., Stengard,J.H., Salomaa,V., Boerwinkle,E. and Nickerson,D.A. TITLE Sequence Polymorphism at the Human Apolipoprotein AII Gene (APOA2): Unexpected Deficit of Variation in an African-American Sample JOURNAL Unpublished REFERENCE 2 (bases 1 to 3319) AUTHORS Fullerton,S.M., Clark,A.G., Weiss,K.M., Taylor,S.L., Stengard,J.H., Salomaa,V., Boerwinkle,E. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (30-APR-2002) Department of Genome Sciences, University of Washington, Box 357730, Seattle, WA 98195-7730, USA FEATURES Location/Qualifiers source 1..3319 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 155 /frequency="0.203" /replace="c" variation 201 /frequency="0.007" /replace="a" variation 872 /frequency="0.340" /replace="c" gene 1137..2466 /gene="APOA2" mRNA join(1137..1170,1340..1415,1709..1841,2237..2466) /gene="APOA2" /product="apolipoprotein AII" variation 1218 /gene="APOA2" /frequency="0.007" /replace="c" CDS join(1364..1415,1709..1841,2237..2354) /gene="APOA2" /codon_start=1 /product="apolipoprotein AII" /protein_id="AAM49807.1" /db_xref="GI:21429231" /translation="MKLLAATVLLLTICSLEGALVRRQAKEPCVESLVSQYFQTVTDY GKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ" variation 1671..1702 /gene="APOA2" /note="multiallelic" /replace="gt" variation 2038 /gene="APOA2" /frequency="0.083" /replace="c" variation 2085 /gene="APOA2" /frequency="0.007" /replace="t" variation 2115 /gene="APOA2" /frequency="0.014" /replace="a" variation 2233 /gene="APOA2" /frequency="0.111" /replace="t" variation 2818 /frequency="0.083" /replace="t" variation 2868 /frequency="0.111" /replace="a" variation 2994 /frequency="0.056" /replace="t" variation 3027 /frequency="0.129" /replace="c" variation 3092 /frequency="0.132" /replace="g" variation 3208 /frequency="0.062" /replace="a" BASE COUNT 895 a 840 c 816 g 768 t ORIGIN 1 tacgctccag cctgagcaac aagagcaaaa ctctgtctca ggaaaacaaa caaaaaaacc 61 tgcacatata cttctgaatt taaaacaaaa gttaaaaaac aaagatttct tggtctctgg 121 tcactacctc cctcatcagc tttgcgcctc cactctcacc ctcaggaatg ttccacatac 181 tcagcgagta tgcttggggg gcaaaagggt gaaagataca aaagcttctg atatctattt 241 aactgatttc acccaaatgc tttgaacctg ggaatgtacc tctccccctc ccccaccccc 301 aacaggagtg agacaagggc cagggctatt gcccctgctg actcaatatt ggctaatcac 361 tgcctagaac tgataaggtg atcaaatgac caggtgcctt caacctttac cctggtagaa 421 gcctcttatt cacctctttt cctgccagag ccctccattg ggaggggacg ggcggaagct 481 gttttctgaa tttgttttac tgggggtagg gtatgttcag tgatcagcat ccaggtcatt 541 ctgggctctc ctgttttctc cccgtctcat tacacattaa ctcaaaaacg gacaagatca 601 tttacacttg ccctcttacc cgaccctcat tcccctaacc cccatagccc tcaaccctgt 661 ccctgatttc aattcctttc tcctttcttc tgctccccaa tatctctctg ccaagttgca 721 gtaaagtggg ataaggttga gagatgagat ctacccataa tggaataaag acaccatgag 781 ctttccatgg tatgatgggt tgatggtatt ccatgggttg atatgtcaga gctttccaga 841 gaaataactt ggaatcctgc ttcctgttgc attcaagtcc aaggacctca gatctcaaaa 901 gaatgaacct caaatatacc tgaagtgtac ccccttagcc tccactaaga gctgtacccc 961 ctgcctctca ccccatcacc atgagtcttc catgtgcttg tcctctcctc ccccatttct 1021 ccaacttgtt tatcctcaca taatccctgc cccactgggc ccatccatag tccctgtcac 1081 ctgacagggg gtgggtaaac agacaggtat atagcccctt cctctccagc cagggcaggc 1141 acagacacca aggacagaga cgctggctag gtaagataag gaggcaagat gtgtgagcag 1201 catccaaaga ggcctgggct tcagttgtgg agagggagag agccaggttg gaatgggcag 1261 caggtaggga gatccctggg gaggagctga agcccatttg gcttcagtgt cccccaaacc 1321 cccaccaccc tcttcctagg ccgccctccc cactgttacc aacatgaagc tgctcgcagc 1381 aactgtgcta ctcctcacca tctgcagcct tgaaggtggg tgtgatatgg agagggggcc 1441 aaaagggaga atgtgctggt ggttatagct acctatctgc ctgtgctctt atatccaggt 1501 ctggcaacca aagggctcaa aaggaagatc attccctctc taaagcccag aaagcccatc 1561 caaagatctg gctggatacc tttttgggga gggggcagag agctggggtg ggtactggca 1621 gaggtatggc aggaggccag gattcactgc tgtggaccca gctgaaaaga gtgtgtgtgt 1681 gtgtgtgtgt gtgtgtgtgt gtgggcagga gctttggttc ggagacaggc aaaggagcca 1741 tgtgtggaga gcctggtttc tcagtacttc cagaccgtga ctgactatgg caaggacctg 1801 atggagaagg tcaagagccc agagcttcag gccgaggcca agtaagtctc agggcaaggg 1861 gttcaggggc tgtggaactg tggagagaaa gaagggaaga tgagaggtcc cacagaagtc 1921 tgaacccagg ggtggggatt agggcagatt aggcttaaat tgcagagaaa aagtatttca 1981 tcacccaaag atcccacacg tctcttagat agagaggaac agcaagaact gggccttgaa 2041 tttcagtctc tagagtctgt ccctctacct agcaaaggtc ttgactctat tcctacctag 2101 gggctttgcc atgcgatgga ccaggcacta gagtttgggg acctgagtca gtctgctctg 2161 acctcccacc accaccaagg cccctgccag tgcctagggt ccctcagatt aaactctaat 2221 cccctcacct atccaggtct tactttgaaa agtcaaagga gcagctgaca cccctgatca 2281 agaaggctgg aacggaactg gttaacttct tgagctattt cgtggaactt ggaacacagc 2341 ctgccaccca gtgaagtgtc cagaccattg tcttccaacc ccagctggcc tctagaacac 2401 ccactggcca gtcctagagc tcctgtccct acccactctt tgctacaata aatgctgaat 2461 gaatccagct ctgagcctgg tatgtttggg ggactgggaa aagtagggga gtaagggagg 2521 agaagaggaa ggaaaaggaa aaatctgctt ctagaaggag agaggtttga gtgtggaggg 2581 gtgaagaaag gattgaagac acaactgatg aaaatgacag gatgagggtg ccatgattct 2641 ccaaacccag agtctcctac agcctgggca cgactctgca ggtgaacact aaagaggctt 2701 tgcattgcac aaggaactag gagaggaagg aaggattcac aaactgaatc cctcgatttc 2761 tggaggtcat agaaaatgag ggtaccctgg tggggtgcag tggctcacac ctgtaatccc 2821 tgcactttgg gaggccaagg taggtggatc acttgagatc aggagttcca gaccagccta 2881 gccaacatgg taaaaccccg tctctactaa aaatacaaaa attagccagg tgttgtggca 2941 cgtgcctgta atcccagcta ctcgggagac tgaggcatga gaatcttttg aaccggggag 3001 gcggaggttg cagtgagctg acatcgtgcc actgcactcc agcctaggtg acagagcaag 3061 actccgtctc aaaaaaaaaa aaaaaaaaaa aaaaaagaaa gtaaagaaaa aaagaaaatg 3121 agggtacccc tcataatttc ctgttagtca ttctatgaag aaaagaaagc ttcccaaggt 3181 gtcacccgtg gccctccttt cccttctgag ccaggggaac actgtgtttc cccctttccc 3241 acaataaaag acttgagttt gctcctctcc ctagaagtgc tctaatttct ccatttaaaa 3301 cctcttatct agaccaggc //