APOA2 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
TACGCTCCAG CCTGAGCAAC AAGAGCAAAA CTCTGTCTCA GGAAAACAAA
50
CAAAAAAACC TGCACATATA CTTCTGAATT TAAAACAAAA GTTAAAAAAC
100
AAAGATTTCT TGGTCTCTGG TCACTACCTC CCTCATCAGC TTTGCGCCTC
150
CACT
C
TCACC CTCAGGAATG TTCCACATAC TCAGCGAGTA TGCTTGGGGG
200 |
var(155):[C:0.203]
G
CAAAAGGGT GAAAGATACA AAAGCTTCTG ATATCTATTT AACTGATTTC
250 |
var(201):[A:0.007]
ACCCAAATGC TTTGAACCTG GGAATGTACC TCTCCCCCTC CCCCACCCCC
300
AACAGGAGTG AGACAAGGGC CAGGGCTATT GCCCCTGCTG ACTCAATATT
350
GGCTAATCAC TGCCTAGAAC TGATAAGGTG ATCAAATGAC CAGGTGCCTT
400
CAACCTTTAC CCTGGTAGAA GCCTCTTATT CACCTCTTTT CCTGCCAGAG
450
CCCTCCATTG GGAGGGGACG GGCGGAAGCT GTTTTCTGAA TTTGTTTTAC
500
TGGGGGTAGG GTATGTTCAG TGATCAGCAT CCAGGTCATT CTGGGCTCTC
550
CTGTTTTCTC CCCGTCTCAT TACACATTAA CTCAAAAACG GACAAGATCA
600
TTTACACTTG CCCTCTTACC CGACCCTCAT TCCCCTAACC CCCATAGCCC
650
TCAACCCTGT CCCTGATTTC AATTCCTTTC TCCTTTCTTC TGCTCCCCAA
700
TATCTCTCTG CCAAGTTGCA GTAAAGTGGG ATAAGGTTGA GAGATGAGAT
750
CTACCCATAA TGGAATAAAG ACACCATGAG CTTTCCATGG TATGATGGGT
800
TGATGGTATT CCATGGGTTG ATATGTCAGA GCTTTCCAGA GAAATAACTT
850
GGAATCCTGC TTCCTGTTGC A
T
TCAAGTCC AAGGACCTCA GATCTCAAAA
900 |
var(872):[C:0.340]
GAATGAACCT CAAATATACC TGAAGTGTAC CCCCTTAGCC TCCACTAAGA
950
GCTGTACCCC CTGCCTCTCA CCCCATCACC ATGAGTCTTC CATGTGCTTG
1000
TCCTCTCCTC CCCCATTTCT CCAACTTGTT TATCCTCACA TAATCCCTGC
1050
CCCACTGGGC CCATCCATAG TCCCTGTCAC CTGACAGGGG GTGGGTAAAC
1100
AGACAGGTAT ATAGCCCCTT CCTCTCCAGC CAGGGC
A
G
G
C
A
C
A
G
A
C
A
C
C
A
1150 | Exon 1 |
UTR
A
G
G
A
C
A
G
A
G
A
C
G
C
T
G
G
C
T
A
G
GTAAGATAAG GAGGCAAGAT GTGTGAGCAG
1200
CATCCAAAGA GGCCTGG
G
CT TCAGTTGTGG AGAGGGAGAG AGCCAGGTTG
1250 |
var(1218):[C:0.007]
GAATGGGCAG CAGGTAGGGA GATCCCTGGG GAGGAGCTGA AGCCCATTTG
1300
GCTTCAGTGT CCCCCAAACC CCCACCACCC TCTTCCTAG
G
C
C
G
C
C
C
T
C
C
C
1350 | Exon 2 |
UTR
C
A
C
T
G
T
T
A
C
C
A
A
C
A
T
G
A
A
G
C
T
G
C
T
C
G
C
A
G
C
A
A
C
T
G
T
G
C
T
A
C
T
C
C
T
C
A
C
C
A
1400
M K L L A A T V L L L T 12
T
C
T
G
C
A
G
C
C
T
T
G
A
A
G
GTGGG TGTGATATGG AGAGGGGGCC AAAAGGGAGA
1450
I C S L E 17
ATGTGCTGGT GGTTATAGCT ACCTATCTGC CTGTGCTCTT ATATCCAGGT
1500
CTGGCAACCA AAGGGCTCAA AAGGAAGATC ATTCCCTCTC TAAAGCCCAG
1550
AAAGCCCATC CAAAGATCTG GCTGGATACC TTTTTGGGGA GGGGGCAGAG
1600
AGCTGGGGTG GGTACTGGCA GAGGTATGGC AGGAGGCCAG GATTCACTGC
1650
TGTGGACCCA GCTGAAAAGA
G
T
G
T
G
T
G
T
G
T
G
T
G
T
G
T
G
T
G
T
G
T
G
T
G
T
G
T
G
T
1700 |
var(1671):[GT:0.007]
G
T
GGGCAG
G
A
G
C
T
T
T
G
G
T
T
C
G
G
A
G
A
C
A
G
G
C
A
A
A
G
G
A
G
C
C
A
T
G
T
G
T
G
G
A
G
A
1750 | Exon 3
G A L V R R Q A K E P C V E 31
G
C
C
T
G
G
T
T
T
C
T
C
A
G
T
A
C
T
T
C
C
A
G
A
C
C
G
T
G
A
C
T
G
A
C
T
A
T
G
G
C
A
A
G
G
A
C
C
T
G
1800
S L V S Q Y F Q T V T D Y G K D L 48
A
T
G
G
A
G
A
A
G
G
T
C
A
A
G
A
G
C
C
C
A
G
A
G
C
T
T
C
A
G
G
C
C
G
A
G
G
C
C
A
A
GTAAGTCTC
1850
M E K V K S P E L Q A E A K 62
AGGGCAAGGG GTTCAGGGGC TGTGGAACTG TGGAGAGAAA GAAGGGAAGA
1900
TGAGAGGTCC CACAGAAGTC TGAACCCAGG GGTGGGGATT AGGGCAGATT
1950
AGGCTTAAAT TGCAGAGAAA AAGTATTTCA TCACCCAAAG ATCCCACACG
2000
TCTCTTAGAT AGAGAGGAAC AGCAAGAACT GGGCCTT
G
AA TTTCAGTCTC
2050 |
var(2038):[C:0.083]
TAGAGTCTGT CCCTCTACCT AGCAAAGGTC TTGA
C
TCTAT TCCTACCTAG
2100 |
var(2085):[T:0.007]
GGGCTTTGCC ATGC
G
ATGGA CCAGGCACTA GAGTTTGGGG ACCTGAGTCA
2150 |
var(2115):[A:0.014]
GTCTGCTCTG ACCTCCCACC ACCACCAAGG CCCCTGCCAG TGCCTAGGGT
2200
CCCTCAGATT AAACTCTAAT CCCCTCACCT AT
C
CAG
G
T
C
T
T
A
C
T
T
T
G
A
A
A
2250 |
var(2233):[T:0.111]
| Exon 4
S Y F E 66
A
G
T
C
A
A
A
G
G
A
G
C
A
G
C
T
G
A
C
A
C
C
C
C
T
G
A
T
C
A
A
G
A
A
G
G
C
T
G
G
A
A
C
G
G
A
A
C
T
G
2300
K S K E Q L T P L I K K A G T E L 83
G
T
T
A
A
C
T
T
C
T
T
G
A
G
C
T
A
T
T
T
C
G
T
G
G
A
A
C
T
T
G
G
A
A
C
A
C
A
G
C
C
T
G
C
C
A
C
C
C
A
2350
V N F L S Y F V E L G T Q P A T Q 100
G
T
G
A
A
G
T
G
T
C
C
A
G
A
C
C
A
T
T
G
T
C
T
T
C
C
A
A
C
C
C
C
A
G
C
T
G
G
C
C
T
C
T
A
G
A
A
C
A
C
2400 |
UTR
100
C
C
A
C
T
G
G
C
C
A
G
T
C
C
T
A
G
A
G
C
T
C
C
T
G
T
C
C
C
T
A
C
C
C
A
C
T
C
T
T
T
G
C
T
A
C
A
A
T
A
2450
A
A
T
G
C
T
G
A
A
T
G
A
A
T
C
C
AGCT CTGAGCCTGG TATGTTTGGG GGACTGGGAA
2500
AAGTAGGGGA GTAAGGGAGG AGAAGAGGAA GGAAAAGGAA AAATCTGCTT
2550
CTAGAAGGAG AGAGGTTTGA GTGTGGAGGG GTGAAGAAAG GATTGAAGAC
2600
ACAACTGATG AAAATGACAG GATGAGGGTG CCATGATTCT CCAAACCCAG
2650
AGTCTCCTAC AGCCTGGGCA CGACTCTGCA GGTGAACACT AAAGAGGCTT
2700
TGCATTGCAC AAGGAACTAG GAGAGGAAGG AAGGATTCAC AAACTGAATC
2750
CCTCGATTTC TGGAGGTCAT AGAAAATGAG GGTACCCTGG TGGGGTGCAG
2800
TGGCTCACAC CTGTAAT
C
CC TGCACTTTGG GAGGCCAAGG TAGGTGGATC
2850 |
var(2818):[T:0.083]
ACTTGAGATC AGGAGTT
C
CA GACCAGCCTA GCCAACATGG TAAAACCCCG
2900 |
var(2868):[A:0.111]
TCTCTACTAA AAATACAAAA ATTAGCCAGG TGTTGTGGCA CGTGCCTGTA
2950
ATCCCAGCTA CTCGGGAGAC TGAGGCATGA GAATCTTTTG AAC
C
GGGGAG
3000 |
var(2994):[T:0.056]
GCGGAGGTTG CAGTGAGCTG ACATCG
T
GCC ACTGCACTCC AGCCTAGGTG
3050 |
var(3027):[C:0.129]
ACAGAGCAAG ACTCCGTCTC AAAAAAAAAA AAAAAAAAAA A
A
AAAAGAAA
3100 |
var(3092):[G:0.132]
GTAAAGAAAA AAAGAAAATG AGGGTACCCC TCATAATTTC CTGTTAGTCA
3150
TTCTATGAAG AAAAGAAAGC TTCCCAAGGT GTCACCCGTG GCCCTCCTTT
3200
CCCTTCT
G
AG CCAGGGGAAC ACTGTGTTTC CCCCTTTCCC ACAATAAAAG
3250 |
var(3208):[A:0.062]
ACTTGAGTTT GCTCCTCTCC CTAGAAGTGC TCTAATTTCT CCATTTAAAA
3300
CCTCTTATCT AGACCAGGC