LOCUS APOA4 3482 bp DNA linear PRI 18-SEP-2003 DEFINITION Homo sapiens. ACCESSION APOA4 VERSION APOA4 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3482) AUTHORS Nickerson,D.A., Smith,J.D., Fullerton,S.M., Clark,A.G., Stengard,J.H., Salomaa,V., Boerwinkle,E., Sing,C.F. and Weiss,K.M. TITLE Direct Submission JOURNAL Submitted (02-APR-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA FEATURES Location/Qualifiers source 1..3482 /organism="Homo sapiens" /db_xref="taxon:9606" gene 58..2660 /gene="APOA4" mRNA join(58..1237,2015..2141,2499..2660) /gene="APOA4" /product="APOA4" variation 120 /gene="APOA4" /frequency="0.01" /replace="A" variation 165..168 /gene="APOA4" /frequency="0.37" /replace="" CDS complement(join(223..1237,2015..2141,2499..2547)) /codon_start=1 /product="apolipoprotein A-IV" /translation="MFLKAVVLTLALVAVAGARAEVSADQVATVMWDYFSQLSNNAKE AVEHLQKSELTQQLNALFQDKLGEVNTYAGDLQKKLVPFATELHERLAKDSEKLKEEI GKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPY AQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEE LRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAEDVRG NLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAG DVEGHLSFLEKDLRDKVNSFFSTFKEKESQDKTLSLPELEQQQEQQQEQQQEQVQMLA PLES" variation 274 /gene="APOA4" /frequency="0.04" /replace="A" variation 315 /gene="APOA4" /frequency="0.15" /replace="A" variation 406 /gene="APOA4" /frequency="0.04" /replace="A" variation 568 /gene="APOA4" /frequency="0.01" /replace="A" variation 933 /gene="APOA4" /frequency="0.04" /replace="A" variation 964 /gene="APOA4" /frequency="0.03" /replace="A" repeat_region 970..1199 /rpt_family="ERVL" /rpt_type=dispersed variation 974 /gene="APOA4" /frequency="0.14" /replace="C" variation 1183 /gene="APOA4" /frequency="0.01" /replace="A" variation 1192 /gene="APOA4" /frequency="0.05" /replace="G" variation 1198 /gene="APOA4" /frequency="0.08" /replace="A" variation 1334 /gene="APOA4" /frequency="0.39" /replace="G" variation 1453 /gene="APOA4" /frequency="0.04" /replace="C" variation 1735 /gene="APOA4" /frequency="0.39" /replace="G" repeat_region 1797..1944 /rpt_family="MIR" /rpt_type=dispersed variation 1803 /gene="APOA4" /frequency="0.16" /replace="G" variation 1853 /gene="APOA4" /frequency="0.04" /replace="A" variation 1993 /gene="APOA4" /frequency="0.08" /replace="T" variation 1994 /gene="APOA4" /frequency="0.04" /replace="A" variation 2104 /gene="APOA4" /frequency="0.18" /replace="C" variation 2511 /gene="APOA4" /frequency="0.01" /replace="T" variation 2645 /gene="APOA4" /frequency="0.04" /replace="T" variation 2695 /frequency="0.05" /replace="G" variation 2981 /frequency="0.01" /replace="T" repeat_region 3286..3364 /rpt_family="MIR" /rpt_type=dispersed repeat_region 3405..3481 /rpt_family="MER2_type" /rpt_type=dispersed BASE COUNT 662 a 1041 c 946 g 833 t ORIGIN 1 gtcatggtta cctccccacc tccccagctg caaggaggat tcatccggca accagttgag 61 gctagattct cagcagcttt attgaatatt gagaggtggt ctcacctccc actggacatg 121 tgtcctcaag ttcataccag aacttctttg ggacagacag acagacaggt ggcagggcag 181 ggcaggtgtc cacgagggtg gggccagtgc accaggggca gctcagctct ccaaaggggc 241 cagcatctgc acctgctcct gctgctgctc ctgctgctgt tcctgctgtt gctccagctc 301 agggagggag agagtcttgt cctggctctc tttctccttg aaggtgctga agaaggagtt 361 gaccttgtcc ctcaggtcct tctccaggaa gctcaagtgg ccttccacgt cccccgcatg 421 ggggcccagt ttctgcctga gctgttccat ctgctgcacc agggctttgt tgaagttttc 481 cccgtagggc tccacccggc gtcggaactc ctccacctgc tggtccaggt gcccacccag 541 ctctgccagt gacttctgca gcccctcggt gttgcccctc aggttgccac gcacgtcctc 601 ggccaagggc gccagcctct gccgcagctc ctcggcactg gccgagatcc tggccttgag 661 ctcctcggcg ttcttcttca tctggaaggt caggccctca agctggtggt tgagcttctc 721 ctgcgtgtcc tgagcatagg gagccaggct gcggcgcagc tcctccacgg tctggtcaat 781 cttgactttg aattcgtcag cgtagggcgt aaggcgtccc ttgagctcct ccacgttctg 841 gtcgatcttg gccttgagct cgtcggcgtg gggcctcagc gaggcctgca ggctgtcggc 901 gttctcccgc agcactctct ccatgcgctg tgcgtagggg gtcagctggc gccgcagctg 961 ctcggcctgc gtgttgacct gggtgcgcag ctggtccgcg tagggctcca ggcgctgctg 1021 aagctctcgc aggttgtccc cgatcttctg gctcacctca ttggcatggg gcagcagccg 1081 ggccctcagc tcctccagct ccttcccaat ctcctccttc agtttctccg agtccttggc 1141 caggcgttca tgcagctcgg tggcaaaggg caccagcttc ttctgcaggt cacctgcgta 1201 agtgttcact tctccaagtt tgtcctggaa gagggcactg tggggaaggg cacaaggagg 1261 ccacgttaca tttggcattt acacggcaag actttgtctg cttgtatacc actcgcctta 1321 tgcacacgtg ctaagacagg tgagtgctca gaggtaccga gttcaccctc cctatggtgg 1381 tgcagattgg agaggatggg tgtcacagac taagttacga tgctgaattt ctatctcagg 1441 atctcccaca tagtttgtct cagaatctac ccaccatgtc acctccagca gtttgctttc 1501 ccctccttgt ctgcagaggg tgggactttg aggtccttcc cagagggagt gttctgggcc 1561 ataggatcac attgtgtaac acaatgttgt cttcttgacc tctgctgggg tcttccagtg 1621 gcacaaggtg ctgctttcct tgcctgtgcc caggggcctc ccaaatattc ccacctccct 1681 ccccttgatt ccactggggc ctgtctttct gaaacgtatt agaaatcagc tcacatgaca 1741 ttttcctccc tccctctctt ccatgagcct gaatgatagg atgtggccat ttgtcaaact 1801 ctagaacgtc aaagcaaaag gacatggcag ggattattcg gtccaaactt ccggtttaca 1861 tatgtggatc ctaggttcag aggcccggcc agttagtggc agggcagtgg gtatcctaag 1921 ctcagggctc ctgtctctaa gctcaaccct tgccagtaca ttgcatggcc tttaagaatt 1981 ccccgtcacc accgcacact gtagtccctc ttacttgagt tgctgggtga gttcagattt 2041 ctggagatgt tccacggcct ccttggcatt gttgctcagc tggctgaagt agtcccacat 2101 cactgtggcc acctggtcag cactgacctc agccctggct cctgggtggt aacagagagc 2161 aattcatgag gccccgtctc ctgtgtggcc cctctgctcc agctctgagc tgcagactgg 2221 atgatggtgg gggtgcctca acctgccatt ttccctgtct gagcttagct ttttggaagc 2281 cacagggata tgtgaaactg gtatagcacc aatgccaatg ggcccaccac tgggactggg 2341 ccagctctcc tgtgagccac ttggcagcca ggcagacctc atgtccagct gggggctgat 2401 gggcactcag aagtgtcctt ttgctttggc tcagcctcca tcctgcacta ctcagagcag 2461 cagcccagga gtgccatcca aagacagctt ctactcaccg gcgacagcca ccagggccag 2521 ggtcaggacc acggccttca ggaacatcct gagctgcttg ctgggctgga ggagtttctt 2581 gccacactgg atcctcccta caatcagggg agctgacaga gaggtcctca ggagagctca 2641 cctgcgctgc agtgggaact gactgaagct cagagccagc cagacattta aactctctcc 2701 ctatcgccac ccccctggct gccctcccct cctccttcct cagtgtgact ccacgctgga 2761 aggtgacaca ttcccaagag gcctcttgga cttttgtgac cctgagacta cgtggaagct 2821 gacagcagat cagggctcag gcgatagtta gaagtggtgg ctgttccgtg cgtgggcacc 2881 cccaccccca ccccaccaac ctcagcatgg aagggaggag gggaacggaa aacagtagga 2941 gaaacacctc agggagccca tgagcccggg actgatgcct cgaggccctg ctggcggctc 3001 tgggtttgtg ccgggctcat ggggggcaaa gtccacatct cctctgtcta ccccagtgaa 3061 gacaggtccc cccagtctcc acatccgcca ctaatgctga ctccatctca gagcaccaga 3121 cactggagtg ggaccatcca ggactgcaga cagcatagtg agctaaaatc taggtctctt 3181 gtcaaggtac acccaagagg agggggccct ggagagcctt tgggcagatg ggtgtgggag 3241 acagggcctt gtcctgaaag ggttaattgt agagtgcttc atgtcccact cccatgctgt 3301 gcctccttgg tctagttatt caaagccctg agcttcagtt tctcctctga acaatgggat 3361 ggttcagtac attaaagaag acattgcttg cgaagtgggt agtacggtca tctctcagtc 3421 tccatgggaa attgattcca ggaccctctg cagataccaa aatccatgga tgttcaagtc 3481 ct //