LOCUS APOA5 4155 bp DNA linear PRI 23-SEP-2003 DEFINITION Homo sapiens. ACCESSION APOA5 VERSION APOA5 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4155) AUTHORS Nickerson,D.A., Smith,J.D., Fullerton,S.M., Clark,A.G., Stengard,J.H., Salomaa,V., Boerwinkle,E., Sing,C.F. and Weiss,K.M. TITLE Direct Submission JOURNAL Submitted (02-APR-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA FEATURES Location/Qualifiers source 1..4155 /organism="Homo sapiens" /db_xref="taxon:9606" gene 68..2568 /gene="APOA5" mRNA join(69..1767,2286..2397,2512..2568) /gene="APOA5" /product="APOA5" variation 434 /gene="APOA5" /frequency="0.05" /replace="G" variation 537..538 /gene="APOA5" /frequency="0.95" /replace="" variation 637 /gene="APOA5" /frequency="0.01" /replace="A" variation 670 /gene="APOA5" /frequency="0.04" /replace="G" variation 752 /gene="APOA5" /frequency="0.04" /replace="A" variation 797 /gene="APOA5" /frequency="0.11" /replace="A" CDS complement(join(828..1767,2286..2397,2512..2560)) /codon_start=1 /product="apolipoprotein A-V" /translation="MASMAAVLTWALALLSAFSATQARKGFWDYFSQTSGDKGRVEQI HQQKMAREPATLKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQEELEE VKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKA QLLGGVDEAWALLQGLQSRVVHHTGRFKELFHPYAESLVSGIGRHVQELHRSVAPHAP ASPARLSRCVQVLSRKLTLKAKALHARIQQNLDQLREELSRAFAGTGTEEGAGPDPQM LSEEVRQRLQAFRQDTYLQIAAFTRAIDQETEEVQQQLAPPPPGHSAFAPEFQQTDSG KVLSKLQARLDDLWEDITHSLHDQGHSHLGDP" variation 1472 /gene="APOA5" /frequency="0.05" /replace="T" variation 1810 /gene="APOA5" /frequency="0.04" /replace="T" variation 2315 /gene="APOA5" /frequency="0.15" /replace="T" variation 2391 /gene="APOA5" /frequency="0.06" /replace="C" variation 2425 /gene="APOA5" /frequency="0.01" /replace="T" variation 2457 /gene="APOA5" /frequency="0.04" /replace="A" variation 2563 /gene="APOA5" /frequency="0.09" /replace="C" variation 2769 /frequency="0.02" /replace="A" variation 3099 /frequency="0.01" /replace="A" variation 3580 /frequency="0.06" /replace="T" variation 3659 /frequency="0.09" /replace="A" variation 3691 /frequency="0.09" /replace="G" variation 3710 /frequency="0.01" /replace="G" variation 3727 /frequency="0.01" /replace="A" repeat_region 3833..3971 /rpt_family="L2" /rpt_type=dispersed variation 3835 /frequency="0.12" /replace="T" variation 3950 /frequency="0.10" /replace="A" variation 4024 /frequency="0.36" /replace="G" BASE COUNT 887 a 1300 c 1097 g 871 t ORIGIN 1 ctactcagtt tgattcagct atgacccttt cagacatggt ccaaatgaga gtcacgccag 61 gcaaacttct atcataaaca tctatttcat ttgagccaga agtctaggct tcaacttggg 121 aacccagagg gaggggctgg agatggggag agcacacagt atgctcccca gagggtttaa 181 ggagctccca cagttgggag ggttcagtcc cttatttagg tgtagagcta tgtcaggaaa 241 catgggctct gccctctcct atcacagccc acacctttcg tacccaccag catcagagcc 301 agcagggata ttcacacacc atcacatgtt ctccccatga tattctcttt ctcccttcta 361 ttcccctgat agctgccatg gcagccctgg ggagacaagt gctcctctct gtggaccagc 421 tgtagcagtg gccaccaggc agccagaagt gactagagcc aaactccagg atgtagtggc 481 acaggcttcc agcatcacgg caaacaggct tgcagataat cacccacatg catggtgcct 541 ctccctccct actccctcac ccttgaatgg agtaactcat gagcattccc aaatgagcac 601 tgggaggctg ggtttgcaaa gcctggtgaa tgtaatgcat ccagattggg gagtcgcagg 661 aggctggata tgcaggagac agcagcccct ttggtggcct ccctgtcctg cacaggacct 721 tccaccctcc acccaacagg ccactttcaa ggactgaacc atgctagagg ctcagagcca 781 aggctcccca gacaaggagc tgggaatggg cctgggcagg tagatcctca ggggtccccc 841 agatggctgt ggccctggtc atgaaggctg tgagtgatgt cttcccacag gtcatccaga 901 cgggcctgca gcttgctcag aaccttgcca ctgtctgttt gttgaaactc tggggcgaag 961 gcactgtggc ctggtggagg tggcgccagc tgctgctgga cctcctcagt ctcctggtcg 1021 atggcgcgag tgaaggcagc tatctgcagg taggtgtcct ggcggaaagc ctgaagtcgc 1081 tggcgcacct cctcggagag catctggggg tccgggccgg ccccttcctc agtcccagtg 1141 cctgcaaagg ctctgctgag ctcttcgcgc agctggtcca ggttctgctg gatgcgtgcg 1201 tgcagggcct tggccttgag cgtgagcttc cgggagagca cctgcacgca gcgactgagg 1261 cgcgcggggc tggcgggggc gtgcggagcc acactgcggt gcagctcctg cacgtggcgc 1321 ccgatgccgc tcaccaggct ctcggcgtat gggtggaaga gctctttgaa gcggccggtg 1381 tggtgcacca cgcggctctg cagtccctgc agcaaagccc aagcctcgtc cacgcccccc 1441 agcaactggg ccttggtgtc ttcccccacc acgcgcaact gctcctgcag ctcctgcacg 1501 cgcagggcca cctgctccat cagatccatc gtgtagggct tcagttgctg ccgcaagccc 1561 tccaaattcc agcccaccag ctcgtgcgcc tctgccatgt agggctggag gcgagccttc 1621 acctcctcca actcctcctg cagctgccgc cgcatgccca ccgggtcctg tgggagccga 1681 ggagcctcgc tcccactcag aggcctcagc ttttccagga acttgttcat attgttgagg 1741 tcttgctcaa ggctgtcttt cagggtcctg gagaagggga cagatatcca ggccgtcaga 1801 ctgctagccc ccatcatctc ctttgtcccc aagtcatcgc gcactgatcc tctgggggaa 1861 ccaaggacgc agggcgttgg ccccagggtc gagggctctt gtcctagccc tggccagtaa 1921 caactcacgc acgaagcaca aacacattgc ccatacaaat ccagacctac aacactctcc 1981 aaagaaacat agatgcgcca catcatcctt tgattctggg gactgcagcg ggcgtcctcc 2041 cgattgatcc caggtcccgc gcctcagtga gcaagggggc aacagctacg gagttgtcaa 2101 ggcgggggct gcaggcagag ggcgctaaag agcccaggat ggccgggatc tgcagacaga 2161 gctagcaccg ctcctttcct ctgtcccagc agcggccaca gaggttgagg cagcagaggc 2221 aggtcatcat ggcatggccc agctgtctcc tcccttcgcc tacacccctt cccctgggca 2281 ctcacgcggg ctcgcgagcc atcttctgct gatggatctg ctccaccctg cctttgtccc 2341 cgctggtctg gctgaagtag tcccagaagc ctttccgtgc ctgggtggcc gaaaacgctg 2401 tggagaggga ctaggtaatc agggcctggg ctctcctccc ccagggtgga cagggccctc 2461 tggccagcct ccacccacac ccccacgttg aagtcagggt cggagaccca cctgaaagaa 2521 gagccagagc ccaggtgagc acggcagcca tgcttgccat tatctgctct gagaagacag 2581 gtggagggag gcctggttag gggaagaagg agacgaaggg acatggcgca ggggacttgc 2641 ccagggggcc tctgcagggg caactgcccg aaatcctgtt accccttcct tgggctgggg 2701 agcacagagc tgttggggct caagaggact gacctaggtg agtcaaggag gctagggtgt 2761 cttcctcaga catgggaaga gggcgtgctc ttgctacctc agtcacatag cagggagcgt 2821 ggtgctctaa ccccttcgca aaggtcccag accccaggaa cagttctcta ggccacttct 2881 accacctctc ccctgcccac ctgtctccct ccctcccatt tcatggtgga aaaactgagc 2941 cataatgagg gcgaagaggc aactctgcca aaatgttcca agaggacgtc ttaggggcca 3001 ccccaggctc tcccctgagg ccacctgcaa tgccctccct taggactgtg acccccatcc 3061 ctctgcccca gctgctcacc tgctcacgtc tgggcacaga gagcagacat tctgctttat 3121 actccagggc cctgagcctc tggcaccaat tgctctgagt aaataccacg tggaagttca 3181 aaagaagttg acctcagctg cctcccagca ctcacctcct gccctttccc tggcacccag 3241 agggttaatg agtgccctgg tatcaggggc tgccccagta gagaagtgct tcccaggagc 3301 tttacggggg atggggctga actcctcacc cagtttctcc caaaccccat gacctttaac 3361 cttcccactg acctgctggc tggcccacca acagagaaga acctgtttgt ctgccaaggg 3421 cccctctctt acacaactac ccagagtcac tgtgtcccag ccggcaagat ggacagtgtt 3481 cacctaccag ccagaacccg agcagcccct gaaagcttca ctacaggttc cgcaggcatc 3541 ctcagccagc attcataggg ttaaagacca accacatccc tctttatgaa acaatcctgg 3601 aacaagcaag ggaagccagg cagggtgaag atgagatggc aagaggcatc tgggccaggg 3661 actctgagcc ccaggaactg gagcgaaagt aagatttgcc ccatgaggaa aagctgaact 3721 ccactcgcag ggcctctgag gagagcaagc ccaaatgctc agatcttctc tgatgacaca 3781 cccactccgt ctacagtact catacacacg ttcacaagct cccgattctt ggtcctaaat 3841 gcatcttgaa tcaatcccct ctcctccatt tccactacca tcattgcacc agttgtctgt 3901 caccttgatt gcattcatag cctccaacag gtctttctac cacactcctg cccatttaat 3961 tcatcctcca ctgtggctca tcctgactca tttccagtct catctgctgc cacataaaac 4021 cacagcattc cctgagcctt tatacaggct tccctctgct tgaaatagcc tatcccctgg 4081 tgaatatata ttcatttttt agagttagtt tgtattagtt agaattagac ttggctgcaa 4141 gggacatata tatgt //