LOCUS APOC1 4941 bp DNA linear PRI 11-SEP-2003 DEFINITION Homo sapiens. ACCESSION apoc1 VERSION APOC1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4941) AUTHORS Nickerson,D.A., Smith,J.D., Fullerton,S.M., Clark,A.G., Stengard,J.H., Salomaa,V., Boerwinkle,E., Sing,C.F. and Weiss,K.M. TITLE Direct Submission JOURNAL Submitted (02-APR-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA FEATURES Location/Qualifiers source 1..4941 /organism="Homo sapiens" /db_xref="taxon:9606" gene 235..4875 /gene="APOC1" mRNA join(235..267,406..483,1723..1858,4706..4875) /gene="APOC1" /product="APOC1" CDS join(426..483,1723..1858,4706..4763) /gene="APOC1" /codon_start=1 /product="APOC1 apolipoprotein C-I" /translation="MRLFLSLPVLVVVLSIVLEGPAPAQGTPDVSSALDKLKEFGNTL EDKARELISRIKQSELSAKMREWFSETFQKVKEKLKIDS" variation 446 /gene="APOC1" /frequency="0.01" /replace="T" variation 514 /gene="APOC1" /frequency="0.01" /replace="A" variation 528 /gene="APOC1" /frequency="0.06" /replace="A" variation 763 /gene="APOC1" /frequency="0.01" /replace="A" repeat_region 847..1130 /rpt_family="Alu" /rpt_type=dispersed variation 880 /gene="APOC1" /frequency="0.01" /replace="A" variation 1066 /gene="APOC1" /frequency="0.23" /replace="C" repeat_region 1218..1520 /rpt_family="Alu" /rpt_type=dispersed variation 1237 /gene="APOC1" /frequency="0.30" /replace="T" repeat_region 1522..1693 /rpt_family="Alu" /rpt_type=dispersed repeat_region 2069..2372 /rpt_family="Alu" /rpt_type=dispersed repeat_region 2384..2518 /rpt_family="Alu" /rpt_type=dispersed repeat_region 2599..2657 /rpt_family="MIR" /rpt_type=dispersed variation 2620 /gene="APOC1" /frequency="0.07" /replace="A" repeat_region 2766..2846 /rpt_family="L2" /rpt_type=dispersed variation 2770 /gene="APOC1" /frequency="0.09" /replace="A" repeat_region 2850..3141 /rpt_family="Alu" /rpt_type=dispersed repeat_region 3231..3522 /rpt_family="Alu" /rpt_type=dispersed variation 3377 /gene="APOC1" /frequency="0.28" /replace="A" variation 3495 /gene="APOC1" /frequency="0.01" /replace="E002" repeat_region 3525..3815 /rpt_family="Alu" /rpt_type=dispersed variation 3531 /gene="APOC1" /frequency="0.17" /replace="A" repeat_region 3880..4209 /rpt_family="Alu" /rpt_type=dispersed variation 4020 /gene="APOC1" /frequency="0.27" /replace="T" variation 4153 /gene="APOC1" /frequency="0.32" /replace="A" repeat_region 4210..4479 /rpt_family="Alu" /rpt_type=dispersed variation 4249 /gene="APOC1" /frequency="0.26" /replace="E004" variation 4412 /gene="APOC1" /frequency="0.01" /replace="A" variation 4436 /gene="APOC1" /frequency="0.20" /replace="G" variation 4534 /gene="APOC1" /frequency="0.01" /replace="A" variation 4837 /gene="APOC1" /frequency="0.04" /replace="G" variation 4863 /gene="APOC1" /frequency="0.02" /replace="G" variation 4912 /frequency="0.01" /replace="T" BASE COUNT 1239 a 1240 c 1409 g 1053 t ORIGIN 1 cacagagtca ggaagattga gaggtgagag tgctgaacgg ggaggggctt tggggctaag 61 ggaagtgccc gggaccccac ctgaccccaa cgctcacggg acaggggcag aggagaaaaa 121 cgtgggtgga cagagggagg caggcggtca ggggaaggct caggaggagg gagatcaaca 181 tcaacctgcc ccgccccctc cccagcctga taaaggtcct gcgggcagga caggacctcc 241 caaccaagcc ctccagcaag gattcaggtt ggtgctgagt gcctgggagg gacacccgcc 301 tacactctgc aagaaactca aaaagggaga tgaggggatc gtgggaggga ggtagggagg 361 gaggagggtg ccactgatcc cctgaacccc tgcctctgcc tccagagtgc ccctccggcc 421 tcgccatgag gctcttcctg tcgctcccgg tcctggtggt ggttctgtcg atcgtcttgg 481 aaggtaaaag tgggatggga gaattgcgga gttggagatt tggaagagtg aaggtggcta 541 caggcctggg gtcccggctt agaggacctc tgagagctcc ggggcccctt ctgggtcgtg 601 gttgcctcat cgtggtcggg tgggtctcca ggttctccca ggctcagtcc cgcaggcgcc 661 aaatctgcgc aggagagcac tagcaaccga tgacgtattg aggcccacac ctctgggatt 721 ggctgtcctg cttcgacagc cttgaaagtg ggtaagctgg gtggggggct ctgggagagg 781 tcagtgctga gtaaggcaat tcccagcagc ttgagcccca ccaggtcact ccagtattcc 841 tccccattct tttttttttt tttttttttc tcttgagacg gagtctcgct ctgtcgccga 901 ggctggagtg cagtggcgcg atctcggctc actgcaagct ccgcctccct ggttcacgcc 961 attctcctgc ctcagcagga ctacaggcgc ccgccaccgc gcccggctaa ttttttgtat 1021 tttcagtaga gacagggttt caccgtggtc tcgatctcct gactttgtga tccgcctgcc 1081 tcgacctccc aaagtgctgg gattacaggc gtgagccacc gcgtccggcc attcctcccc 1141 attctaacca catgatcccc aaggatctct atccatcccg gtatcccaac ctaagggggt 1201 tccaataaca aatttttggc cgggcagggt ggctcacgcc tgtaatccca gcactttggg 1261 aggccgaggc gggcagatca cttgaggtca ggagttcgaa accagcctgg ccaacatggt 1321 gaaacttcgt ctctactaaa aatacaaaaa aattagccag gtgtggaggc acgcgcctgt 1381 aggcccagct actcgggagg ctgaggcagg agaatcactt gaacccggga ggcggaggtt 1441 gcagtgagcc gagatcatac cactgcactc cagcctggct gacacagcaa gactccgtct 1501 caaaacaaaa caaaacaaaa atagctgggt gtggtggtgc acacctgtaa tcccagctac 1561 ttgggaggct gaggcaggag aactgcttga acccgggagg tggtggttgc agtaggccga 1621 gatcatgcca ctgcactcca gcttgggcta cagagcaaga ctccatctcc aaaaaaaaaa 1681 aaaaaaaaac aaattttgaa cccctgccca tcttcctggc aggcccagcc ccagcccagg 1741 ggaccccaga cgtctccagt gccttggata agctgaagga gtttggaaac acactggagg 1801 acaaggctcg ggaactcatc agccgcatca aacagagtga actttctgcc aagatgcggt 1861 tagaaccctt cccagggcac gggagagctg gggtgtgttt ttgggtggag ccctggcaga 1921 tggtccaaga tgaacagatt gaaaaaaaaa caagtcctgg agaggctgac aacatccctc 1981 tggtcacaca gctagatctc aaggtgctca gacttcaagg acagtttccc tgactcccat 2041 ccaggccata ttttaaaaga tggtcttggg ctgggcacgg tggctcatgc ttgcaatccc 2101 agcacttagg gaggccgagg tgggctgatt gcctgaggtc aggagttcga gaccagtctg 2161 accaacatgg tgaaaccttg tctctactaa aaatacaaaa aaattaggca ggcatggtgg 2221 cgtgcacctg taatcccagc tagtcgggag gctgaggcag gggaattgct tgaaccagga 2281 aggtgggagt tacagtgagc caacattgtg ccagcctggg tgacagaagg agactctgtc 2341 tcaaaaaaaa aaaaaaaaaa aaaaaaaaac aagatggtct tgcccaggta tggtggctca 2401 cacctgtaat tccagcacta tgggaggctg agatgggagg attgcttgag cccaggagtt 2461 cgagaccagc ctgaccaaca tggcgagatc ctgtctccat ttaaaaaaaa aaaaaaaaag 2521 atggttttgt gaggtaatga aaatgaaggc cccaagcttg gccagacctg ggtccccagg 2581 ctggagtagc accccttcct gtgtgatctt gacagagggg cattactgtg agcctcagtt 2641 tcctctccta taaactggtg gttctacagg gaagtaaagg agcaggccta cagggtgtct 2701 ggtacatgta gatgctcagt atatcatgaa acccaccctt gccccctttg gcaagttaga 2761 gagtcattcg ttctttcaaa aatatttact gagcatctgc taagtgctgg aaactgtttc 2821 aatgtgggga ataaaacagt gaagaacgtg ccgagcacgg tggctcacac ctgtaacccc 2881 accactttgg aaggccgagg tgggtggatc acttgaggtc aggagtgcga gaaccccgtc 2941 cctaatagaa atgcaaaaaa aattagctgg gcatggtggc ccatgcctgt agtcccagct 3001 ccttgggagg ctgaggcgag aggattgctt gagcccagga gatctaggct gcagtgcgcc 3061 atgtttgtgc cactgcattc cagcctgggt aacagaatga gaccctgtct caacaaaaaa 3121 agaaaagaaa agagaagaaa agagaaaaga aagacaggga gggagggagg aaggaaggga 3181 gggagggagg gaaaatagag ccaggcataa acttagaaag atcgtttgga ggccaggcac 3241 aatggctcac acctgtaatc ccagcacttt gggaggccaa ggcaagcaga tcacctgagg 3301 tcaggagttc gagaccagcc taacatggag aaaccctgtc tctactaaaa atacaaaatt 3361 agccgggcgt ggtggtgcat tcctgtagtc ctagctactc gggagcctga ggcaggagaa 3421 tcacttgaac ccgggaggcg gaggttgcag tgagccgaga tcatgccact gcactccagc 3481 ctgggcgaca aggcgagact ccatgccaaa aaagaaaaaa aactcctggc gcggtggctc 3541 acgccagtaa tcccagcact gtgggaggct gagcaggcgg atcacgaggt caggagttcg 3601 agactagcct gctcaacata atgaaaccct ctctgtacta aaaatacaaa aattagctgg 3661 gtgtggtggc aggcacctgt agtcccagct actcgggagg ctgaggcagg agaatggctt 3721 gaacctggga ggcagaggtt gcagtgagcc gagacagtgc cattgcactc cagtccaggt 3781 gacagagcga aactccatct caaaaaaaaa aggaaggcat tggtagcaag agatggcagg 3841 ccttgaaagc caggccaggg tgaagtgttt cttttttttt tttttttttt ttctttttaa 3901 attttttttt ttgagacgga gtctcgctct gtcacccagg ctggattgca gtggcctgat 3961 ctcggctcac tgcaagttcc gcctcccggg ttcatgccat tctcctgcct caccctcccg 4021 agtagctggg actacaggca cctgccacca cgccagctaa ttttttgtat tcttagtaga 4081 atgtagaatt tacttagtag aattttttgt attcttagcc agcatggtct cgatctcctg 4141 acctggtgat ccgcccgcct cggcctccca aagtgctggg attacaggcg tgagccacgg 4201 cgcccggcct tattttttct ttttgagatg tacccagact ggagtacagt ggtgcgatct 4261 cggcttactg gaacctccac ctcccgggtt caggcaattc tcctgcctca gcctcatgag 4321 tacttggaac tacaggtgtg tgacaccaca catggtattt tttgtatttt tagtgaagat 4381 gacatttcac catgttgccc aggttggtct cgaactcctg acctcaagtg atcagcctac 4441 ctcggcctcc caaagtgttg ggattacagg cgtgagccaa atgcccagcc aagggtaaag 4501 tgtttagact tcaacgtgct ttggtccatc tgggaaactg aggcacagaa gttggcccac 4561 ccagcccagc ggtcctccta atcccacaga cagtggggat ggagattctg caaggggaag 4621 aggtgggagt caggtagcag gcagaatttg gacagcctgg gaggtagctg cacacagtga 4681 cccccttcct tattcctccc cacagggagt ggttttcaga gacatttcag aaagtgaagg 4741 agaaactcaa gattgactca tgaggacctg aagggtgaca tcccaggagg ggcctctgaa 4801 atttcccaca ccccagcgcc tgtgctgagg actccctcca tgtggcccca ggtgccacca 4861 ataaaaatcc tacagaaaat tctctcctga gtgcttcttt actctgggga aggggctgcg 4921 ggagagggta ggggcttcca g //