APOC1 Color FASTA

The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.

*Display courtesy of GeneSNPs

CACAGAGTCA GGAAGATTGA GAGGTGAGAG TGCTGAACGG GGAGGGGCTT 50 TGGGGCTAAG GGAAGTGCCC GGGACCCCAC CTGACCCCAA CGCTCACGGG 100 ACAGGGGCAG AGGAGAAAAA CGTGGGTGGA CAGAGGGAGG CAGGCGGTCA 150 GGGGAAGGCT CAGGAGGAGG GAGATCAACA TCAACCTGCC CCGCCCCCTC 200 CCCAGCCTGA TAAAGGTCCT GCGGGCAGGA CAGGACCTCC CAACCAAGCC 250 | Exon 1 | UTR CTCCAGCAAG GATTCAGGTT GGTGCTGAGT GCCTGGGAGG GACACCCGCC 300 TACACTCTGC AAGAAACTCA AAAAGGGAGA TGAGGGGATC GTGGGAGGGA 350 GGTAGGGAGG GAGGAGGGTG CCACTGATCC CCTGAACCCC TGCCTCTGCC 400 TCCAGAGTGC CCCTCCGGCC TCGCCATGAG GCTCTTCCTG TCGCTCCCGG 450 | Exon 2 | UTR | var(446):[T:0.01] M R L F L S L P 8 TCCTGGTGGT GGTTCTGTCG ATCGTCTTGG AAGGTAAAAG TGGGATGGGA 500 V L V V V L S I V L E 19 GAATTGCGGA GTTGGAGATT TGGAAGAGTG AAGGTGGCTA CAGGCCTGGG 550 | var(514):[A:0.01] | var(528):[A:0.06] GTCCCGGCTT AGAGGACCTC TGAGAGCTCC GGGGCCCCTT CTGGGTCGTG 600 GTTGCCTCAT CGTGGTCGGG TGGGTCTCCA GGTTCTCCCA GGCTCAGTCC 650 CGCAGGCGCC AAATCTGCGC AGGAGAGCAC TAGCAACCGA TGACGTATTG 700 AGGCCCACAC CTCTGGGATT GGCTGTCCTG CTTCGACAGC CTTGAAAGTG 750 GGTAAGCTGG GTGGGGGGCT CTGGGAGAGG TCAGTGCTGA GTAAGGCAAT 800 | var(763):[A:0.01] TCCCAGCAGC TTGAGCCCCA CCAGGTCACT CCAGTATTCC TCCCCATTCT 850 | REPEAT TTTTTTTTTT TTTTTTTTTC TCTTGAGACG GAGTCTCGCT CTGTCGCCGA 900 | var(880):[A:0.01] GGCTGGAGTG CAGTGGCGCG ATCTCGGCTC ACTGCAAGCT CCGCCTCCCT 950 GGTTCACGCC ATTCTCCTGC CTCAGCAGGA CTACAGGCGC CCGCCACCGC 1000 GCCCGGCTAA TTTTTTGTAT TTTCAGTAGA GACAGGGTTT CACCGTGGTC 1050 TCGATCTCCT GACTTTGTGA TCCGCCTGCC TCGACCTCCC AAAGTGCTGG 1100 | var(1066):[C:0.23] GATTACAGGC GTGAGCCACC GCGTCCGGCC ATTCCTCCCC ATTCTAACCA 1150 CATGATCCCC AAGGATCTCT ATCCATCCCG GTATCCCAAC CTAAGGGGGT 1200 TCCAATAACA AATTTTTGGC CGGGCAGGGT GGCTCACGCC TGTAATCCCA 1250 | REPEAT | var(1237):[T:0.30] GCACTTTGGG AGGCCGAGGC GGGCAGATCA CTTGAGGTCA GGAGTTCGAA 1300 ACCAGCCTGG CCAACATGGT GAAACTTCGT CTCTACTAAA AATACAAAAA 1350 AATTAGCCAG GTGTGGAGGC ACGCGCCTGT AGGCCCAGCT ACTCGGGAGG 1400 CTGAGGCAGG AGAATCACTT GAACCCGGGA GGCGGAGGTT GCAGTGAGCC 1450 GAGATCATAC CACTGCACTC CAGCCTGGCT GACACAGCAA GACTCCGTCT 1500 CAAAACAAAA CAAAACAAAA ATAGCTGGGT GTGGTGGTGC ACACCTGTAA 1550 | REPEAT TCCCAGCTAC TTGGGAGGCT GAGGCAGGAG AACTGCTTGA ACCCGGGAGG 1600 TGGTGGTTGC AGTAGGCCGA GATCATGCCA CTGCACTCCA GCTTGGGCTA 1650 CAGAGCAAGA CTCCATCTCC AAAAAAAAAA AAAAAAAAAC AAATTTTGAA 1700 CCCCTGCCCA TCTTCCTGGC AGGCCCAGCC CCAGCCCAGG GGACCCCAGA 1750 | Exon 3 G P A P A Q G T P D 29 CGTCTCCAGT GCCTTGGATA AGCTGAAGGA GTTTGGAAAC ACACTGGAGG 1800 V S S A L D K L K E F G N T L E 45 ACAAGGCTCG GGAACTCATC AGCCGCATCA AACAGAGTGA ACTTTCTGCC 1850 D K A R E L I S R I K Q S E L S A 62 AAGATGCGGT TAGAACCCTT CCCAGGGCAC GGGAGAGCTG GGGTGTGTTT 1900 K M R 65 TTGGGTGGAG CCCTGGCAGA TGGTCCAAGA TGAACAGATT GAAAAAAAAA 1950 CAAGTCCTGG AGAGGCTGAC AACATCCCTC TGGTCACACA GCTAGATCTC 2000 AAGGTGCTCA GACTTCAAGG ACAGTTTCCC TGACTCCCAT CCAGGCCATA 2050 TTTTAAAAGA TGGTCTTGGG CTGGGCACGG TGGCTCATGC TTGCAATCCC 2100 | REPEAT AGCACTTAGG GAGGCCGAGG TGGGCTGATT GCCTGAGGTC AGGAGTTCGA 2150 GACCAGTCTG ACCAACATGG TGAAACCTTG TCTCTACTAA AAATACAAAA 2200 AAATTAGGCA GGCATGGTGG CGTGCACCTG TAATCCCAGC TAGTCGGGAG 2250 GCTGAGGCAG GGGAATTGCT TGAACCAGGA AGGTGGGAGT TACAGTGAGC 2300 CAACATTGTG CCAGCCTGGG TGACAGAAGG AGACTCTGTC TCAAAAAAAA 2350 AAAAAAAAAA AAAAAAAAAC AAGATGGTCT TGCCCAGGTA TGGTGGCTCA 2400 | REPEAT CACCTGTAAT TCCAGCACTA TGGGAGGCTG AGATGGGAGG ATTGCTTGAG 2450 CCCAGGAGTT CGAGACCAGC CTGACCAACA TGGCGAGATC CTGTCTCCAT 2500 TTAAAAAAAA AAAAAAAAAG ATGGTTTTGT GAGGTAATGA AAATGAAGGC 2550 CCCAAGCTTG GCCAGACCTG GGTCCCCAGG CTGGAGTAGC ACCCCTTCCT 2600 | REPEAT GTGTGATCTT GACAGAGGGG CATTACTGTG AGCCTCAGTT TCCTCTCCTA 2650 | var(2620):[A:0.07] TAAACTGGTG GTTCTACAGG GAAGTAAAGG AGCAGGCCTA CAGGGTGTCT 2700 GGTACATGTA GATGCTCAGT ATATCATGAA ACCCACCCTT GCCCCCTTTG 2750 GCAAGTTAGA GAGTCATTCG TTCTTTCAAA AATATTTACT GAGCATCTGC 2800 | REPEAT | var(2770):[A:0.09] TAAGTGCTGG AAACTGTTTC AATGTGGGGA ATAAAACAGT GAAGAACGTG 2850 | REPEAT CCGAGCACGG TGGCTCACAC CTGTAACCCC ACCACTTTGG AAGGCCGAGG 2900 TGGGTGGATC ACTTGAGGTC AGGAGTGCGA GAACCCCGTC CCTAATAGAA 2950 ATGCAAAAAA AATTAGCTGG GCATGGTGGC CCATGCCTGT AGTCCCAGCT 3000 CCTTGGGAGG CTGAGGCGAG AGGATTGCTT GAGCCCAGGA GATCTAGGCT 3050 GCAGTGCGCC ATGTTTGTGC CACTGCATTC CAGCCTGGGT AACAGAATGA 3100 GACCCTGTCT CAACAAAAAA AGAAAAGAAA AGAGAAGAAA AGAGAAAAGA 3150 AAGACAGGGA GGGAGGGAGG AAGGAAGGGA GGGAGGGAGG GAAAATAGAG 3200 CCAGGCATAA ACTTAGAAAG ATCGTTTGGA GGCCAGGCAC AATGGCTCAC 3250 | REPEAT ACCTGTAATC CCAGCACTTT GGGAGGCCAA GGCAAGCAGA TCACCTGAGG 3300 TCAGGAGTTC GAGACCAGCC TAACATGGAG AAACCCTGTC TCTACTAAAA 3350 ATACAAAATT AGCCGGGCGT GGTGGTGCAT TCCTGTAGTC CTAGCTACTC 3400 | var(3377):[A:0.28] GGGAGCCTGA GGCAGGAGAA TCACTTGAAC CCGGGAGGCG GAGGTTGCAG 3450 TGAGCCGAGA TCATGCCACT GCACTCCAGC CTGGGCGACA AGGCGAGACT 3500 | var(3495):[E002:0.01] CCATGCCAAA AAAGAAAAAA AACTCCTGGC GCGGTGGCTC ACGCCAGTAA 3550 | REPEAT | var(3531):[A:0.17] TCCCAGCACT GTGGGAGGCT GAGCAGGCGG ATCACGAGGT CAGGAGTTCG 3600 AGACTAGCCT GCTCAACATA ATGAAACCCT CTCTGTACTA AAAATACAAA 3650 AATTAGCTGG GTGTGGTGGC AGGCACCTGT AGTCCCAGCT ACTCGGGAGG 3700 CTGAGGCAGG AGAATGGCTT GAACCTGGGA GGCAGAGGTT GCAGTGAGCC 3750 GAGACAGTGC CATTGCACTC CAGTCCAGGT GACAGAGCGA AACTCCATCT 3800 CAAAAAAAAA AGGAAGGCAT TGGTAGCAAG AGATGGCAGG CCTTGAAAGC 3850 CAGGCCAGGG TGAAGTGTTT CTTTTTTTTT TTTTTTTTTT TTCTTTTTAA 3900 | REPEAT ATTTTTTTTT TTGAGACGGA GTCTCGCTCT GTCACCCAGG CTGGATTGCA 3950 GTGGCCTGAT CTCGGCTCAC TGCAAGTTCC GCCTCCCGGG TTCATGCCAT 4000 TCTCCTGCCT CACCCTCCCG AGTAGCTGGG ACTACAGGCA CCTGCCACCA 4050 | var(4020):[T:0.27] CGCCAGCTAA TTTTTTGTAT TCTTAGTAGA ATGTAGAATT TACTTAGTAG 4100 AATTTTTTGT ATTCTTAGCC AGCATGGTCT CGATCTCCTG ACCTGGTGAT 4150 CCGCCCGCCT CGGCCTCCCA AAGTGCTGGG ATTACAGGCG TGAGCCACGG 4200 | var(4153):[A:0.32] CGCCCGGCCT TATTTTTTCT TTTTGAGATG TACCCAGACT GGAGTACAGT 4250 | REPEAT | var(4249):[E004:0.26] GGTGCGATCT CGGCTTACTG GAACCTCCAC CTCCCGGGTT CAGGCAATTC 4300 TCCTGCCTCA GCCTCATGAG TACTTGGAAC TACAGGTGTG TGACACCACA 4350 CATGGTATTT TTTGTATTTT TAGTGAAGAT GACATTTCAC CATGTTGCCC 4400 AGGTTGGTCT CGAACTCCTG ACCTCAAGTG ATCAGCCTAC CTCGGCCTCC 4450 | var(4412):[A:0.01] | var(4436):[G:0.20] CAAAGTGTTG GGATTACAGG CGTGAGCCAA ATGCCCAGCC AAGGGTAAAG 4500 TGTTTAGACT TCAACGTGCT TTGGTCCATC TGGGAAACTG AGGCACAGAA 4550 | var(4534):[A:0.01] GTTGGCCCAC CCAGCCCAGC GGTCCTCCTA ATCCCACAGA CAGTGGGGAT 4600 GGAGATTCTG CAAGGGGAAG AGGTGGGAGT CAGGTAGCAG GCAGAATTTG 4650 GACAGCCTGG GAGGTAGCTG CACACAGTGA CCCCCTTCCT TATTCCTCCC 4700 CACAGGGAGT GGTTTTCAGA GACATTTCAG AAAGTGAAGG AGAAACTCAA 4750 | Exon 4 E W F S E T F Q K V K E K L K 80 GATTGACTCA TGAGGACCTG AAGGGTGACA TCCCAGGAGG GGCCTCTGAA 4800 | UTR I D S 83 ATTTCCCACA CCCCAGCGCC TGTGCTGAGG ACTCCCTCCA TGTGGCCCCA 4850 | var(4837):[G:0.04] GGTGCCACCA ATAAAAATCC TACAGAAAAT TCTCTCCTGA GTGCTTCTTT 4900 | var(4863):[G:0.02] ACTCTGGGGA AGGGGCTGCG GGAGAGGGTA GGGGCTTCCA G