LOCUS APOC2 6438 bp DNA linear PRI 02-APR-2003 DEFINITION Homo sapiens APOC2 (APOC2) gene, complete cds. ACCESSION APOC2 VERSION APOC2 KEYWORDS . SOURCE Homo sapiens ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6438) AUTHORS Nickerson,D.A., Smith,J.D., Fullerton,S.M., Clark,A.G., Stengard,J.H., Salomaa,V., Boerwinkle,E., Sing,C.F. and Weiss,K.M. TITLE Direct Submission JOURNAL Submitted (02-APR-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA FEATURES Location/Qualifiers source 1..6438 /organism="Homo sapiens" /db_xref="taxon:9606" variation 194 /frequency="0.41" /replace="T" variation 198 /frequency="0.01" /replace="T" variation 242 /frequency="0.01" /replace="A" variation 288 /frequency="0.01" /replace="T" repeat_region 337..442 /rpt_family="Satellite" /rpt_type=dispersed variation 488 /frequency="0.01" /replace="A" variation 623 /frequency="0.37" /replace="G" repeat_region 734..871 /rpt_family="Alu" /rpt_type=dispersed variation 850 /frequency="0.03" /replace="A" variation 853 /frequency="0.04" /replace="A" variation 1042 /frequency="0.01" /replace="T" variation 1324 /frequency="0.01" /replace="A" variation 1357 /frequency="0.46" /replace="C" variation 1442 /frequency="0.46" /replace="T" gene 1450..4807 /gene="APOC2" mRNA join(1450..1490,3881..3948,4116..4275,4574..4807) /gene="APOC2" /product="APOC2" repeat_region 1666..1775 /rpt_family="Alu" /rpt_type=dispersed repeat_region 1829..1953 /rpt_family="Alu" /rpt_type=dispersed variation 1851 /gene="APOC2" /frequency="0.01" /replace="T" repeat_region 1960..2276 /rpt_family="Alu" /rpt_type=dispersed variation 2090 /gene="APOC2" /frequency="0.01" /replace="A" variation 2191 /gene="APOC2" /frequency="0.46" /replace="T" repeat_region 2285..2582 /rpt_family="Alu" /rpt_type=dispersed variation 2410 /gene="APOC2" /frequency="0.09" /replace="C" variation 2486 /gene="APOC2" /frequency="0.18" /replace="A" variation 2566 /gene="APOC2" /frequency="0.49" /replace="C" repeat_region 2928..3066 /rpt_family="Alu" /rpt_type=dispersed variation 2935 /gene="APOC2" /frequency="0.07" /replace="G" variation 3010 /gene="APOC2" /frequency="0.08" /replace="G" variation 3030 /gene="APOC2" /frequency="0.48" /replace="G" repeat_region 3067..3206 /rpt_family="Alu" /rpt_type=dispersed variation 3086 /gene="APOC2" /frequency="0.44" /replace="T" repeat_region 3207..3503 /rpt_family="Alu" /rpt_type=dispersed variation 3259 /gene="APOC2" /frequency="0.01" /replace="T" variation 3289 /gene="APOC2" /frequency="0.01" /replace="G" variation 3348 /gene="APOC2" /frequency="0.08" /replace="A" variation 3459 /gene="APOC2" /frequency="0.01" /replace="C" repeat_region 3504..3676 /rpt_family="Alu" /rpt_type=dispersed variation 3600 /gene="APOC2" /frequency="0.49" /replace="G" variation 3692 /gene="APOC2" /frequency="0.01" /replace="G" variation 3778 /gene="APOC2" /frequency="0.44" /replace="T" variation 3806 /gene="APOC2" /frequency="0.02" /replace="G" variation 3814 /gene="APOC2" /frequency="0.23" /replace="G" variation 3820 /gene="APOC2" /frequency="0.03" /replace="A" CDS join(3894..3948,4116..4275,4574..4664) /gene="APOC2" /codon_start=1 /product="APOC2" /translation="MGTRLLPALFLVLLVLGFEVQGTQQPQQDEMPSPTFLTQVKESL SSYWESAKTAAQNLYEKTYLPAVDEKLRDLYSKSTAAMSTYTGIFTDQVLSVLKGEE" repeat_region 4331..4554 /rpt_family="Satellite" /rpt_type=dispersed variation 4493 /gene="APOC2" /frequency="0.49" /replace="T" repeat_region 4872..4966 /rpt_family="L2" /rpt_type=dispersed variation 4971 /frequency="0.35" /replace="T" variation 5004 /frequency="0.10" /replace="A" repeat_region 5011..5308 /rpt_family="Alu" /rpt_type=dispersed variation 5303 /frequency="0.49" /replace="T" variation 5310 /frequency="0.48" /replace="G" variation 5324 /frequency="0.48" /replace="T" repeat_region 5391..5740 /rpt_family="ERV1" /rpt_type=dispersed variation 5398 /frequency="0.28" /replace="A" variation 5512 /frequency="0.01" /replace="A" repeat_region 5760..6067 /rpt_family="Alu" /rpt_type=dispersed variation 5815 /frequency="0.49" /replace="A" variation 5922 /frequency="0.12" /replace="G" variation 6037 /frequency="0.49" /replace="A" repeat_region 6183..6438 /rpt_family="Alu" /rpt_type=dispersed variation 6395 /frequency="0.48" /replace="A" BASE COUNT 1597 a 1663 c 1788 g 1390 t ORIGIN 1 ggttagcggt caggggacac ataagggtaa aggcaggagg caagaggact ggcagggggc 61 tgccctgggc caccgggagc gacacaggat gagcatggag ggaaagggag aaggggattc 121 tagggtccca gcctacccaa gttgccctct ggttccacct agcatgccag ccagagggcc 181 caggaaggaa ccccgagccc cccaccaaag ctaaagatga gtcgctggag cctggtgagg 241 ggcaggatga aggagctgct ggagacagtg gtgaacagga ccagagacgg gtggcaatgg 301 ttctggtgag ggtgtgctgg gctgggtggt gggaggggac tcctgggtct gagggaggag 361 gggctggggc ctggacccct gagtctcagg gaggaggaaa gggtgggagt ggggctgtga 421 cccctaggtc tgggaggagt ggagggttag agctgagagc aggaactcct aggtcacaga 481 gaggagcgga taaatggggc agagaacacc tggggagagc tggggcctcc actgtgatgt 541 cctctctcct gtaggagccc gagcaccttc cggggcttca tgcagaccta ctatgacgac 601 cacctgaggg acctgggtcc gctcaccaag gcctggttcc tcgaatccaa agacagcctc 661 ttgaagaaga cccacagcct gtgccccagg cttgtctgtg gggacaagga ccagggttaa 721 aatgttcata aaagccaggt gtggttgtgg cgggtgcctg tagtcccagc tactcaggag 781 gctgaggtag gatgatggct tgagcccagg agttcgagac cagcctgggc aacacagcga 841 gatctcttgg gggtaaaaca aaaagaaaaa aaaaagttca tacttctcca ataaataaag 901 tctcacctgt gtccctgtct ggatccttcc ccagtgtggc cagaaaaaaa cccaccccac 961 tgcctcccag gaatcaatga gtagaagagg tgacacctga tggggaagga agagtaggga 1021 ggtcgggaag ggtatcaagg aataacaccc tattgtgggc ttgcggagaa tgggggactt 1081 caaggcgtgt cagtttcagg agggtgaggg caggagcgtg ggtggagtca gcaggtcccc 1141 atgatggccc tcactgagag cttcgccctt gtctcctaca agctctgact ccattcccag 1201 tgggcaccca gcacctccaa cccctccaca gcccccaacc cagcctctgt cggaggcgaa 1261 ttctcagagt gagggttccc tgtcacttga gagaaggttc cctgtgacgt gaccttgggg 1321 gacgtcattg ccctttctgt ccccacccac cccctcggca gttctgttgg ccaggacttt 1381 ggcctagaca aaggatgggg gttgtggctg tggagcggaa gtgggtctca accactataa 1441 agcctctctg tgcccgtccg gagctggtga ggacagcctg ccagagtctg gtaagaaagg 1501 gactcagggt gcggggacag gggggcgtca gcagggagag ggcaaagatc gataaagcag 1561 gaattttaag aggcacaata ttagaagccc gtgttggaac catgactgtg tgtgtgtgtg 1621 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg agagagagag agagggagat ggagtctcgc 1681 tatgtagccc aggctagact caaactcctg ggctcaagca atcctcctgc ctcagcctcc 1741 ccagtagctg ggactacagg tgcaccacca cactccacaa atcacagaat ttagaactgt 1801 agactatttg agcttctgct tagagttagg gtggctgagg tggggaggat cccttgagcc 1861 caggagtttg aggatgcagt gagctgtgat cttgccaccg tgttccagcc tgggtgacag 1921 agaaacccca tttctaaaaa agagaaagaa aaagggatag gtacaatggc tcatgcctgt 1981 aatcccagca ctctgggagg ccgaggcggg tggatcactt gaggtcagga gttcgacacc 2041 agccttacca gcatggtgaa accgcatcta tactaaaaat acaaaaattg gccgggtgtg 2101 gtagcatatg cctgtaatcc cagctattcc agaggctgag acaggagaat tgcttgaacc 2161 caggaagcgg aggttgcagt gagcccagat cgtgccactg tactctagcc tgggtgacag 2221 agcaagactc agtcttggcg gaaaaaaaga atgaaaaaat ttaaaaaact aaaaaagaac 2281 tgtaggctgg gcgtggtggc ttacacttgt aatccaaacg ctttgggagg ccaaggcaaa 2341 cggatcactt gatgtcagga gttggagacc agcctggcca acatggtgaa accccgtctc 2401 tactaaaaat acaaaaatta gacaggcatg gtggtgcatg cttgtatttc cagttactca 2461 ggaggctgag gcaggagaat cgctcgaacc cggaagacag aggttgcggt gagccaaaat 2521 tgcgccatcg cactccagcc tgggcgagag aacaagacct tgtcttggaa aaaaaaaaag 2581 aattgtagac catttgcttg tgttctttct ccggggatca gatctcaccc tctttctgcc 2641 gtacttcctc atctcctacg tgtggatgat gatattgtgc cctgtgcatg ttcttcgtca 2701 ccaaaagtgc ctctctcata gagcaggtga gaactcagtg aggagatgca gggacatgag 2761 gtctgactta gggcagagcc ctaaggtaac acatttgatc tactgtaggt ccttaatggt 2821 gtctgcagag cacctccctg cactgactca gccttagcaa agggcagagg ctttgctgtg 2881 ttccctgctg ggcccagaac tgtttaggtg ctcaagaaag ccttctaggc tgggctcagt 2941 ggctcacacc tgtactccca gcaccctggg gaggccgaga tgggaggatc gcttgagccc 3001 aggagttcca gaccagcctg ggcaacaaaa caagtctccc atctctacaa aagaataaaa 3061 attagcagct gggcatggtg gctcacgcct gtaattccag cactttggga ggccaaggca 3121 ggcaaatcac ttgaggttag gagttcaaga ccagcctggc caacatggtg aaaccccatc 3181 tctactaaaa atacaaaaat caggtggggc acagtggctc aagcctgtaa tcctagcact 3241 ttgggaggcc aaggtgggcg gatcacgagg tcagaagttc gagaccagcc tggccagcat 3301 ggtgaaaccc catctctact aaaaatacaa aatattagcc gggcatggtg gcaggtgctt 3361 gtgattccag ctccttggga ggctgaggca gaagaattgc tagaaccctg gaggcagagg 3421 ttgcagtgag ccgagaacac gccactgcac tccagcctgg gtgacagagc gagactccat 3481 ctcaaaaaat acgaaaacaa aaatcagccg ggtggtggcg ggtgcctgta atcccagcta 3541 ctggggaggc tgaggcagga gaattgcttg aacctgggag gtgggggttg cagtgagcca 3601 agattgcacc actgcactcc agcctgggca acagagtgag attccatctc aaaaaagaaa 3661 aaaataataa ttaaaatgtt aaaatcagga gtagaatcac agaatgttgg aaagtgaggc 3721 ccaagaaggg ggctgtgtcc aagtccatgc atgggaaact tgactgggac accgagcaca 3781 cacagagcag gatctcagtc ccccccacca gagtggggcg tgaccacagg aacagccgcc 3841 tccagtcagc ctgccacatg acaccccctc aatgttccag gtctctggac actatgggca 3901 cacgactcct cccagctctg tttcttgtcc tcctggtatt gggatttggt gagtgtgggc 3961 ttccggggag ggaagccttg gggaggggaa tgagctccaa gcatcttccc agcccaggcc 4021 cttcttacct ctgcctctgc cctctcctct tcttccttcc tcctttcccc ctgctgcagc 4081 cccacgggct ctcctgacac actctccccc tgcagaggtc caggggaccc aacagcccca 4141 gcaagatgag atgcctagcc cgaccttcct cacccaggtg aaggaatctc tctccagtta 4201 ctgggagtca gcaaagacag ccgcccagaa cctgtacgag aagacatacc tgcccgctgt 4261 agatgagaaa ctcaggtagc acctgcccct ggagaaatgg ggtctggccc ataccaccga 4321 ctgcatccag gacccagaag ttcaggcccc agcccctcct ccctcagacc caggagtcca 4381 ggcctcagcc cctcctccct cagacccagg agtccaggcc cccagcccgt cctccctcag 4441 acccaggagt ccaggccccc agcccctcct ccctcagacc caggagtcca ggtccccaga 4501 ccctcctccc tcagacccag gagtccaggc ccccagcccc tcctccctct aaccatctgt 4561 gctttctccc cagggacttg tacagcaaaa gcacagcagc catgagcact tacacaggca 4621 tttttactga ccaagttctt tctgtgctga agggagagga gtaacagcca gaccccccat 4681 cagtggacaa ggggagagtc ccctactccc ctgatccccc aggttcagac tgagctcccc 4741 cttcccagta gctcttgcat cctcctccca actctagcct gaattctttt caataaaaaa 4801 tacaattcaa gttgcttctc atggatggca ctgcttttct gaggactcaa ggtgccaaga 4861 tggaggggct gactcagtcc agccaacatt taatgagcac ctactttatg tatggagctc 4921 taacccatgg gtccatggga ataaagcagt gaatagtaac aataaataat cgtaacagca 4981 attagagact aatctttatt gaagtccggc tttctctctt ttattttttt attttttgag 5041 acagggtttc actctgtcac ccaggctgga cagcagtggt gcaatctcgg ctcactgcac 5101 cctccgcctc ccaggttcca gcgattctgt gtgcctcagc ctctggagta gctgggatta 5161 tgggcatgtg ccactgtgca cggctaatgt ttgtattttt agtagggttt tgccagttgg 5221 ctaggctggt ctcaaacttc tgacctcaag tgatccaccc gcctcagcct cccaaagtac 5281 tggggtgaca ggcatgagcc accgcgccat gccaaaatcc agccttctca tttgtaaaat 5341 aacaaatcat agacacagct agtccacagt ggcctctgac agtctccagt tgttaacggt 5401 gaatggtgtc caggtttttg gcgtcctgaa caaagaactg gacaaaacgc acaaacaaag 5461 caaggaagga atgaagggat ttattgaaaa cgaacataca ctaaacagtg tgggagcggg 5521 cccaagcata tgggttcaaa agccctgtta cagaattttt gggagtttaa attcccccta 5581 gaggattccc cttccactgg ttacttctgg tacaccctat gtaaatggag aggatgaaga 5641 aaagttacaa agtcatttat ggcctaccgg agaggatgtt tcctgttata gctgaagtga 5701 attggcctta tgttccctgc ctccctattt tcctgcctta cagttgctgg actgacacat 5761 tttttatttt atttattttg ttttgagata aggtcttgct ctgtcgccca ggctgaagtg 5821 cagtggtgag atcttggctt actgtagcct tgaccttttg ggctcaagag atcctcccat 5881 ctcagcctcc caagtagttg ggactaggga tgcccactgc cacacctggc taattttttg 5941 tatttttagt agagacgggg tttcgtcaag ttgcctaggc tagtctccaa ttcctgggct 6001 caagcgatct gcccaccttg cccttccaaa gtgttgggat tacgggtgtg aaccaccgca 6061 ccaggcctgg gctgacactt taaacgtgcc attgcaatca gtgtataatg gtcccgtggc 6121 agagggagaa tggtgcccaa gtcagtactt cttggctggg acccaagaag acaaacctct 6181 agggccggcg tggtggctca cgcctgtaat cccagcactt tggttggctg aggtgggcag 6241 atcatctgag gtcaggagtt caagaccagc ctggccaaca tggtgaaacc ttgtctctaa 6301 taaaaacaca aaaattagct aggggtggcc cgcgcctgta atcccagtta cctggaggct 6361 gaggcaggag aattgcttgt accctggagg cggagatagt gccactgcac tccagcctgg 6421 gcagcagagt gagactcc //