APOC3 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
GGCCACTTTC TCAGGCCTCT GATTTCATAC TGTGGTGTTA GTTACTTCTG
50
AGAGGACAGC TTGCTGCCAG AGCTCTATTT TTTATGTTAG AGGCTCCTTC
100
TGCCTGCAGA CTCT
G
CTGTC TGGGAAGGGC ACAGCGTTAG GAGGGAGAGG
150 |
var(115):[T:0.02]
GAGGTGTGAG TCCCTCC
G
TG GAC
C
CGCT
G
C
T
T
T
G
T
A
C
T
T
C
T
C
T
A
T
C
T
C
A
T
200 |
var(168):[A:0.02]
|
var(174):[A:0.05]
|
REPEAT
T
T
C
C
T
T
T
T
C
A
G
C
A
C
C
A
C
T
C
T
G
G
G
A
A
A
T
C
A
G
T
A
T
T
C
C
A
G
C
C
C
C
A
T
T
T
T
A
T
C
250 |
var(224):[C:0.46]
C
T
C
A
G
A
A
A
A
T
T
G
A
G
G
C
T
C
T
G
A
G
A
T
G
T
T
A
T
C
T
C
T
G
T
G
A
C
C
T
G
G
G
T
C
C
T
A
T
T
300
A
C
G
T
G
C
C
A
A
A
G
G
C
A
T
C
A
T
T
T
A
A
G
C
C
T
A
A
G
A
T
G
T
C
C
T
G
G
C
T
C
C
A
A
G
G
T
GTC
350
AGCATCTGGA AGACAGGCGC CCTCATCCTG CCATCCCTGC TGCGGCTTCA
400
CTGTGGGCCC AGGGGACATC TCAGCC
C
CGA GAAGGGTCAG CGGCCCCTCC
450 |
var(427):[T:0.04]
TGGACCAC
C
G
ACTCCCCGCA GAACTCCTCT GTGCCCTCTC CTCACCAGAC
500 |
var(459):[T:0.01]
|
var(460):[A:0.09]
CTTGTTCCTC CCAGTTGCTC CCACAGCCAG GGGGCAGTGA GGGCTGCTCT
550
TCCCCCAGCC CCACTGAGGA AC
C
CAGGAAG GTGAACGAGA GAATCAGTCC
600 |
var(573):[T:0.01]
TGGTGGGGGC TGGGGAGGGC CCCAGACATG AGACCAGCTC CTCCCCCAGG
650
GGATGTTATC AGTGGGTCCA GAGGGCAAAA TAGGGAGCCT GGTGGAGGGA
700
GGGGCAAAGG CCTCGGGCTC TGAGCGGCCT TGGCCCTTCT CCACCAACCC
750
CTGCCCTACA CT
C
AGGGGGA GGC
G
GCG
G
GG GGCACACAGG GTGGGGGCGG
800 |
var(763):[C:0.44]
|
var(774):[G:0.44]
|
var(778):[:0.56]
GTGGGGGGCT GCTGGGTGAG CAGCACTCGC CTGCCTGGAT TGAAACCCAG
850
AGATGGAGGT GCTGGGAGGG GCTGTGAGAG CTCAGCCCTG TAACCAGGCC
900
TTGCCGGAGC CACTGATGCC
C
GGTCTTCTG TGCCTTTACT CCAAACA
C
CC
950 |
var(921):[T:0.49]
|
var(948):[T:0.45]
CCCAGCCCAA GCCACCCACT TG
T
TCTCAAG TCTGAAGAAG CCCCTCACCC
1000 |
var(973):[C:0.04]
CTCTACTCCA GGCTGTGTTC AGGGCTTGGG GCTGGTGGAG GGAGGGGCCT
1050
GAAATTCCAG TGTGAAAGGC TGAGATGGGC CCGAGGCCCC TGGCCTATGT
1100
CCAAGCCATT TCCCCTCTCA CCAGCCTCTC CCTGGGGAGC CAGTCAGCTA
1150
GGAAGGAATG AGGGCTCCCC AGGCCCACCC CCAGTTCCTG AGCTCATCTG
1200
GGCTGCAGGG CTGGCGGGAC AGCAGCGTGG ACTCAGTCTC CTAGGGATTT
1250
CCCAACTCTC CCGCCC
G
CTT GCTGCATCTG GACACCCTGC CTCAGGCCCT
1300 |
var(1267):[A:0.01]
CATCTCCACT GGTCAGCAGG TGACCTTTGC CCAGCGCCCT GGGTCCTCAG
1350
TGCCTGCTGC CCTGGAGATG ATATAAAACA GGTCAGAACC CTCC
T
GCCTG
1400 |
var(1395):[G:0.02]
TC
T
G
C
T
C
A
G
T
T
C
A
T
C
C
C
T
A
G
A
G
G
C
A
G
C
T
G
C
T
C
C
A
G
GTAAT GCCCTCTGGG
1450 | Exon 1 |
UTR
GAGGGGAAAG AGGAGGGGAG GAGGATGAAG AGGGGCAAGA GGAGCTCCCT
1500
GCCCAGCCCA GCCAGCAAGC CTGGAGAAGC ACT
T
G
C
T
A
G
A
G
C
T
A
A
G
G
A
A
G
1550 |
REPEAT
C
C
T
C
G
G
A
G
C
T
G
G
A
C
G
G
G
T
G
C
C
C
C
C
C
A
C
C
C
C
T
C
A
T
C
A
T
A
A
C
C
T
G
A
A
G
A
A
C
A
1600 |
var(1554):[T:0.04]
|
var(1556):[C:0.26]
|
var(1564):[T:0.10]
T
G
G
A
G
G
C
C
C
G
G
G
A
G
G
G
G
T
G
T
C
A
C
T
T
G
C
C
C
A
A
A
G
C
T
A
C
A
T
A
G
G
G
G
G
T
G
G
G
G
1650 |
var(1639):[C:0.20]
C
T
G
G
A
A
G
T
G
G
C
T
C
C
A
A
G
T
GC AGGTTCCCCC CTCATTCTTC AGGC
T
T
A
G
G
G
1700 |
REPEAT
C
T
G
G
A
G
G
A
A
G
C
C
T
T
A
G
A
C
A
G
C
C
C
A
G
T
C
C
T
A
C
C
C
C
A
G
A
C
A
G
G
G
A
A
A
C
T
G
A
G
1750
G
C
C
T
G
G
A
G
A
G
G
G
C
C
A
G
A
A
A
T
C
A
C
C
C
A
A
A
G
A
C
A
C
A
C
A
G
C
A
T
G
T
T
G
G
C
T
G
G
A
1800
C
T
G
G
A
C
G
G
A
G
A
T
C
A
G
T
C
C
A
G
A
C
C
G
C
A
G
G
T
G
C
C
T
T
G
A
T
G
T
T
C
A
G
T
C
T
G
G
T
G
1850
G
G
T
T
T
T
C
T
G
C
T
C
CATCCCAC CCACCTCCCT TTGGGCCTCG ATCCCTCGCC
1900
G
CTCACCAGT CCCCCTTCTG AGAGCCCGTA T
G
AGCAGGGA GCCGGCCCCT
1950 |
var(1901):[C:0.49]
|
var(1932):[G:0.40]
ACTCCTTCTG GCAGACCCAG CTAAGGTTCT ACCTTAGGGG CCAC
G
CCACC
2000 |
var(1995):[A:0.07]
TC
C
CCAGGGA GGGGTCCAGA GGCATGGGGA CCTGGGGTGC CCCTCACAGG
2050 |
var(2003):[T:0.03]
ACACTTCCTT GCAG
G
A
A
C
A
G
A
G
G
T
G
C
C
A
T
G
C
A
G
C
C
C
C
G
G
G
T
A
C
T
C
C
T
T
G
T
2100 | Exon 2 |
UTR
M Q P R V L L V 8
T
G
T
T
G
C
C
C
T
C
C
T
G
G
C
G
C
T
C
C
T
G
G
C
C
T
C
T
G
C
C
C
GTAAGCAC TTGGTGGGAC
2150
V A L L A L L A S A 18
TGGGCTGGGG GCAGGGTGGA GGCAACTTGG GGATCCCAGT CCCA
A
TGGGT
2200 |
var(2195):[G:0.01]
GGTCAAGCAG GAGCCCAGGG CTCGTCCAGA GGCCGATCCA CCCCACTCAG
2250
CCCTGCTCTT TCCTCAG
G
A
G
C
T
T
C
A
G
A
G
G
C
C
G
A
G
G
A
T
G
C
C
T
C
C
C
T
T
C
T
C
A
2300 | Exon 3
R A S E A E D A S L L 29
G
C
T
T
C
A
T
G
C
A
G
G
G
C
T
A
C
A
T
G
A
A
G
C
A
C
G
C
C
A
C
C
A
A
G
A
C
C
G
C
C
A
A
G
G
A
T
G
C
A
2350 |
var(2314):[T:0.32]
S F M Q G Y M K H A T K T A K D A 46
C
T
G
A
G
C
A
G
C
G
T
G
C
A
G
G
A
G
T
C
C
C
A
G
G
T
G
G
C
C
C
A
G
C
A
G
G
C
C
A
G
GTACACCCG
2400
L S S V Q E S Q V A Q Q A R 60
CTGGCCTCCC TCCCCATCCC CCCTGCCAGC TGCCTCCATT CCCACCC
G
CC
2450 |
var(2448):[A:0.24]
CC
T
GCCCTGG TGAGATCCCA ACAATGGAAT GGAGGTGCTC CAGCCTCCCC
2500 |
var(2453):[A:0.15]
TGGGCCTGTG CCTCTTCAGC CTCCTCTTTC CTCACAGGGC CTTTGTCAGG
2550
CTGCTGCGGG AGAGATGACA GAGTTGAGAC TGCATTCCTC CCAGGTCCCT
2600
CCTTTCTCCC C
G
GAGCAGTC CTAGGGCG
C
G CCGTTTTAGC CCTCATTTCC
2650 |
var(2612):[A:0.22]
|
var(2629):[T:0.14]
ATTTTCCTTT CCTTTCCC
T
T
T
C
T
T
T
C
T
C
T
T
T
C
T
A
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
2700 |
REPEAT
|
var(2677):[C:0.19]
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
2750
T
C
C
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
T
C
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
C
T
T
T
C
T
T
T
C
T
C
T
T
T
C
2800
T
T
T
C
T
T
T
C
T
T
T
C
T
T
T
C
C
T
T
T
T
T
C
T
T
T
C
T
T
T
C
C
C
T
C
T
C
T
T
C
C
T
T
T
C
T
C
T
C
T
2850
T
T
C
T
T
T
C
T
T
C
T
T
C
T
T
T
T
T
T
T
T
T
T
A
A
T
G
G
A
G
T
C
T
C
C
C
T
C
T
G
T
C
A
C
C
C
A
G
G
C
2900 |
var(2896):[T:0.09]
T
G
G
A
G
T
G
C
A
G
T
G
G
T
G
C
C
A
T
C
T
C
G
G
C
T
C
A
C
T
G
C
A
A
C
C
T
C
C
G
T
C
T
C
C
C
G
G
G
T
2950 |
var(2940):[A:0.01]
T
C
A
A
C
C
C
A
T
T
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
C
A
A
G
T
A
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
A
C
3000
G
C
G
C
C
A
C
C
A
C
A
C
C
C
A
G
C
T
A
A
T
T
T
T
T
G
T
A
T
T
T
T
T
A
G
C
A
G
A
G
A
T
G
G
G
G
T
T
T
C
3050 |
var(3002):[T:0.02]
A
C
C
A
T
G
T
T
G
G
C
C
A
G
G
T
T
G
G
T
C
T
T
G
A
A
T
T
C
C
T
G
A
C
C
T
C
A
G
G
G
G
A
T
C
C
T
C
C
T
3100
G
C
C
T
C
G
G
C
C
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
A
C
G
A
G
C
C
A
C
T
G
C
G
C
C
T
G
3150 |
var(3118):[C:0.24]
|
var(3126):[C:0.01]
|
var(3135):[T:0.37]
G
C
C
CCATTTT CCTTTTCTGA AGGTCTGGCT AGAG
C
A
G
T
G
G
T
C
C
T
C
A
G
C
C
T
3200 |
REPEAT
T
T
T
T
G
G
C
A
C
C
A
G
G
G
A
C
C
A
G
T
T
T
T
G
T
G
G
T
G
G
A
C
A
A
T
T
T
T
T
C
C
A
T
G
G
G
C
C
A
G
3250
C
G
G
G
G
A
T
G
G
T
T
T
T
G
G
G
A
T
G
A
A
G
C
T
G
T
T
C
C
A
C
C
T
C
A
G
A
T
C
A
T
C
A
G
G
C
A
T
T
A
3300
G
A
T
T
C
T
C
A
T
A
A
G
G
A
G
C
C
C
T
C
C
A
C
C
T
A
G
A
T
C
C
C
T
G
G
C
A
T
G
T
G
C
A
G
T
T
C
A
C
A
3350
A
T
A
G
G
G
T
T
C
A
C
A
C
T
C
C
T
A
T
G
A
G
A
A
T
G
T
A
A
G
G
C
C
A
C
T
T
G
A
T
C
T
G
A
C
A
G
G
A
G
3400 |
var(3352):[C:0.24]
G
C
G
G
A
G
C
T
C
A
G
G
C
G
G
T
A
T
T
G
C
T
C
A
C
T
C
A
C
C
C
A
C
C
A
C
T
C
A
C
T
T
C
G
T
G
C
T
G
T
3450
G
C
A
G
C
C
C
G
G
C
T
C
C
T
A
A
C
A
G
T
C
C
A
T
G
G
A
C
C
A
G
T
A
C
C
T
A
T
C
T
A
T
G
A
C
T
T
G
G
G
3500
G
G
T
T
G
G
G
G
A
C
C
C
C
T
G
GGCTA GGGGTTTGCC TTGGGAGGCC CCACCTGACC
3550
C
AATTCAAGC CCGTGAGTGC TTCTGCTTTG TTCTAAGACC TGGGGCCAGT
3600 |
var(3551):[T:0.19]
GTGAGCAGAA GTGTGTCCTT CCTCTCCCAT CCTGCCCCTG CCCATCAGTA
3650
CTCTCCTCTC CCCTACTCCC TTCTCCACCT CACCCTGACT GGCATTAGCT
3700
GGCATAGCAG AGGTGTTC
A
T
A
A
A
C
A
T
T
C
T
T
A
G
T
C
C
C
C
A
G
A
A
C
C
G
G
C
T
T
T
G
3750 |
REPEAT
|
var(3720):[C:0.01]
G
G
G
T
A
G
G
T
G
T
T
A
T
T
T
T
C
T
C
A
C
T
T
T
G
C
A
G
A
T
G
A
G
A
A
A
A
T
T
G
A
G
G
C
T
C
A
G
A
G
3800 |
var(3753):[:0.01]
C
G
A
T
T
A
G
G
T
G
A
C
C
T
G
C
C
C
C
A
G
A
T
C
A
C
A
C
A
A
C
T
A
A
T
C
A
A
T
C CTCCAATGAC
3850
TTTCCAAATG AGAGGCTGCC TCCCTCTGTC CTACCCTGCT CAGAGCCACC
3900
AGGTTGTGCA ACTCCAGG
T
G GTGCTGTTTG CACAGAAAAC AATGACAGCC
3950 |
var(3919):[C:0.37]
TTGACCTTTC ACATCTCCCC ACCCTGTCAC TTTGTGCCTC AGGCCCAGGG
4000
GCATAAACAT CTGAGGTGAC CTGGAGATGG CAGGGTTTGA CTTGTGCTGG
4050
GGTTCCTGCA AGGATATCTC TTCTCCCAGG GTGGCAGCTG TGGGGGATTC
4100
CTGCCTGAGG TCTCAGGGCT GTCGTCCAGT GAAGTTGAGA GGGTGGTGTG
4150
GTCCTGACTG GTGTCGTCCA
G
TGGGGACAT GGGTGTGGGT CCCATGGTTG
4200 |
var(4171):[A:0.04]
CCTACAGAGG AGTTCTCATG CCCTGCTCTG TTGCTTCCCC TGACTGATTT
4250
AG
G
G
G
C
T
G
G
G
T
G
A
C
C
G
A
T
G
G
C
T
T
C
A
G
T
T
C
C
C
T
G
A
A
A
G
A
C
T
A
C
T
G
G
A
G
C
A
C
4300 | Exon 4
G W V T D G F S S L K D Y W S T 76
C
G
T
T
A
A
G
G
A
C
A
A
G
T
T
C
T
C
T
G
A
G
T
T
C
T
G
G
G
A
T
T
T
G
G
A
C
C
C
T
G
A
G
G
T
C
A
G
A
C
4350
V K D K F S E F W D L D P E V R 92
C
A
A
C
T
T
C
A
G
C
C
G
T
G
G
C
T
G
C
C
T
G
A
G
A
C
C
T
C
A
A
T
A
C
C
C
C
A
A
G
T
C
C
A
C
C
T
G
C
C
4400 |
UTR
P T S A V A A 99
T
A
T
C
C
A
T
C
C
T
G
C
C
A
G
C
T
C
C
T
T
G
G
G
T
C
C
T
G
C
A
A
T
C
T
C
C
A
G
G
G
C
T
G
C
C
C
C
T
G
4450 |
var(4413):[G:0.13]
|
var(4444):[T:0.40]
T
A
G
G
T
T
G
C
T
T
A
A
A
A
G
G
G
A
C
A
G
T
A
T
T
C
T
C
A
G
T
G
C
T
C
T
C
C
T
A
C
C
C
C
A
C
C
T
C
A
4500
T
G
C
C
T
G
G
C
C
C
C
C
C
T
C
C
A
G
G
C
A
T
G
C
T
G
G
C
C
T
C
C
C
A
A
T
A
A
A
G
C
T
G
G
A
C
A
A
G
A
4550
A
G
C
T
G
C
T
A
T
G
AGTGGGCCGT CGCAAGTGTG CCATCTGTGT CTGGGCATGG
4600
GAAAGGGCCG AGGCTGTTCT GTGGGTGGGC ACTGGACAGA CTCCAGGTCA
4650
GGCAGGCATG GAGGCCAG
C
G CTCTATCCAC CTTCTGGTAG CTGGGCAG
T
C
4700 |
var(4669):[T:0.01]
|
REPEAT
T
C
T
G
G
G
C
C
T
C
A
G
T
T
T
C
T
T
C
A
T
C
T
C
T
A
A
G
G
T
A
G
G
A
A
T
CACC CTCCG