LOCUS APOC4 4510 bp DNA linear PRI 07-APR-2003 DEFINITION Homo sapiens APOC4 (APOC4) gene, complete cds. ACCESSION APOC4 VERSION APOC4 KEYWORDS . SOURCE Homo sapiens ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4510) AUTHORS Nickerson,D.A., Smith,J.D., Fullerton,S.M., Clark,A.G., Stengard,J.H., Salomaa,V., Boerwinkle,E., Sing,C.F. and Weiss,K.M. TITLE Direct Submission JOURNAL Submitted (02-APR-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA FEATURES Location/Qualifiers source 1..4510 /organism="Homo sapiens" /db_xref="taxon:9606" repeat_region 1..281 /rpt_family="Alu" /rpt_type=dispersed variation 92 /frequency="0.23" /replace="-" variation 204 /frequency="0.44" /replace="G" repeat_region 287..331 /rpt_family="MIR" /rpt_type=dispersed repeat_region 332..639 /rpt_family="Alu" /rpt_type=dispersed repeat_region 640..714 /rpt_family="MIR" /rpt_type=dispersed variation 757 /frequency="0.01" /replace="A" gene 957..4213 /gene="APOC4" mRNA join(957..1072,3468..3609,3859..4213) /gene="APOC4" /product="APOC4" CDS join(997..1072,3468..3609,3859..4024) /gene="APOC4" /codon_start=1 /product="APOC4: apolipoprotein C-IV" /translation="MSLLRNRLQALPALCLCVLVLACIGACQPEAQEGTPSPPPKLKM SRWSLVRGRMKELLETVVNRTRDGWQWFWSPSTFRGFMQTYYDDHLRDLGPLTKAWFL ESKDSLLKKTHSLCPRLVCGDKDQG" repeat_region 1472..1646 /rpt_family="Alu" /rpt_type=dispersed repeat_region 1647..1939 /rpt_family="Alu" /rpt_type=dispersed variation 1702 /gene="APOC4" /frequency="0.01" /replace="A" variation 1733 /gene="APOC4" /frequency="0.29" /replace="T" misc_feature 1860..2126 /gene="APOC4" /note="Region not scanned for variation" repeat_region 1940..2087 /rpt_family="Alu" /rpt_type=dispersed repeat_region 2161..2459 /rpt_family="Alu" /rpt_type=dispersed repeat_region 2476..2625 /rpt_family="MIR" /rpt_type=dispersed variation 2559 /gene="APOC4" /frequency="0.02" /replace="T" variation 2623 /gene="APOC4" /frequency="0.42" /replace="T" variation 2640 /gene="APOC4" /frequency="0.09" /replace="T" variation 2683 /gene="APOC4" /frequency="0.01" /replace="A" variation 2703 /gene="APOC4" /frequency="0.01" /replace="T" variation 2753 /gene="APOC4" /frequency="0.01" /replace="A" variation 2767 /gene="APOC4" /frequency="0.01" /replace="T" variation 2886 /gene="APOC4" /frequency="0.01" /replace="C" repeat_region 2971..3281 /rpt_family="Alu" /rpt_type=dispersed variation 2971 /gene="APOC4" /frequency="0.04" /replace="G" variation 3380 /gene="APOC4" /frequency="0.06" /replace="A" variation 3498 /gene="APOC4" /frequency="0.42" /replace="T" variation 3502 /gene="APOC4" /frequency="0.01" /replace="T" variation 3546 /gene="APOC4" /frequency="0.01" /replace="A" variation 3592 /gene="APOC4" /frequency="0.01" /replace="T" repeat_region 3641..3746 /rpt_family="Satellite" /rpt_type=dispersed variation 3927 /gene="APOC4" /frequency="0.42" /replace="G" repeat_region 4038..4175 /rpt_family="Alu" /rpt_type=dispersed variation 4346 /frequency="0.01" /replace="T" BASE COUNT 1032 a 1091 c 1373 g 1014 t ORIGIN 1 gagacggagt cttgctcttt cgcccaggct ggactgcagt ggcgcgatct cggctcaatg 61 caagctccac ctcccaggtt cacgccattc tcctgcctca gcctcccgag tagctaggac 121 tacaggcgcc tgccaccacg cctggctaat ttttcatatt tttagtagag atggggtttc 181 accgtgttag ccaagatggt ctcaatctcc tgacctcgtg atccgcctgc ctcggcctcc 241 caaagtgttg gggttacagg catgagccac cgcgcctggc caacagcaat gatctttgag 301 cacctatatt gccagtctcc acggtaagag ctttcttcat tttttgtttt gttttgtttc 361 aagacagagt cttgctctgt cacccaggct ggagtgcagt ggtgtgatcg cggctcactg 421 cagccttcac ttcccgggtt caagccattc tcctgcctca gcctcccaag tagctgggat 481 tacaggcacg catcactact tctggctaat ttttgtattt ttagtaggga cagggttttt 541 caccatgttg gccaggttgg tctcaaactc ctggcctcat atgatctgcc cacctcggcc 601 tcccaaagtg ctgggattac aggcgtgagc cactgcgcct ttctttgtat ttgttcaagt 661 aatatactga aatatgtact gtgcctccca ctttatggag gaggaaactg aggccagcaa 721 atgaggctgt catgggaggt ggagacagga tttgaacctg cctcagtgca ggaggctcaa 781 gagcctctgt cttctctcag ggcactgtgt gggagggtga gaaggaggga ggcccacaga 841 ggcatgacct ctgattgcca ctgtcacctg ggccctgctc tctgaagtct ctgccaagcg 901 gggaggtggc cgggggaggg ccctgctctg tgcagcctcc cctcccccgg cccgcagagt 961 tgagcacaga gggacagagg cacggaaccc ccagaaatgt ccctcctcag aaacaggctc 1021 caggccctgc ctgccctgtg cctctgcgtg ctggtcctgg cctgcattgg gggtgagaag 1081 aagtgggtgg agggatgtgg ggcccacacc tggtgggtgt gagtgtggct gtgtgtcctg 1141 tggctctgta gccacgtgag acatgagtac ggagtgtgtg cgtttcatgg cgtgcgtatg 1201 catgtgcgtg tcggggagtg tgtgtgtcgg tggctgagag tgaagtgtga atgtcacatt 1261 ggtacaaact gggatcatct gtgtgtgtgc acgtgcgtgc gtggaagtgg gagtatgcag 1321 tcgtggtaaa aaagtgcatg tctgtgtgca tatgtgtatt tgtgtgcacc tgtctctctg 1381 tggggtatgt gtgtgcaaaa tatttgagtg tgtggacatg tgtgaggggg tgagtgtgtg 1441 ctggtgtgta cgtctgtgtt ttgcatatgc attttttttt ttttttttga gacggagtct 1501 cactctgtca cccaggctgg agtgcagtgg tagcagtggt gcgatcttgg ctcactgcat 1561 catccgccta cccgtttcaa gggattctcc tgcctcagtc ttcagagtat ttgggactac 1621 agacacacgc caccatgcct ggctaatttt ttttttttga gacggagtct cgctctgtta 1681 cccaggctgg agtgcagtgg cgtgatcttg gctcactgca acgtccgcct cccgggttca 1741 cgccattctc ctgcctcagc ctcccgagta gctgggacta caggagccca ccaccacgcc 1801 tggctaattt tttgtatttt tactagagac ggggtttcgc cgtgttagcc aggatggtct 1861 ccatatcctg acctcgtgat ccgcctgcct cggccttcca aagtgctagg attataggcg 1921 tgagccactg cgcctggcca atgcctggct aattttttta tatttttggt agagacaggg 1981 ttttgccatg ttgcccaggc tggtcttgaa atcctgacct caggtgatcc gcccgccttg 2041 gcctcccaaa gtgctgggat tacaggcatg agccaccacg cccggccatg tactttatgt 2101 taaaatggga tcatattcta gatcagcatt atccagtaga aatttaaatt tttaatacag 2161 ggccaggcac ggtggctcat gcctgtaatc ccagcacttt cggaggccga ggcgggtgga 2221 tcgcaaggtc aggagatttg agatcatcct ggctaacaga tgggtaaaaa cccatctcta 2281 ctaaaaatac aaaaaattag ccatgcatgg tggcatgcgc ctgtagtccc agctactcgg 2341 gaggctgagg ccggagaatc acttgaaccc gggaggcaga ggttgcagtg agccgagatc 2401 gcgccactgc attccaacct gggtgacaga gcgagactcc gtctgaaaaa aaaaaaaaat 2461 ttaacacgta tgtagacaat gtgcaaggca ccattccatg tgcatcgtat gtagtaactc 2521 ttaattctca cgataaccct gaggtagata ttattacccc gttctacaaa aggagaaaca 2581 gtcctgggga gacaggataa gtcaccggcc aaggcacaca gccagctaca tgtggccccc 2641 gcgtgacggc tggtctctgt aggcgaggct ttgtccagat gcgtgggtag aaggtctggc 2701 ccggaaagag gaactgacag caaggctaag ccaatgtctg cccctggggg cagaaagtca 2761 cctcctgctc tccctccact gtccacagag gtagctcaga cagggtgggg gtcacaggag 2821 aacgaaggga gaagggggta gttcctgggc agcaaaatca ggtggtgaag ggaggcatca 2881 gaggatggca attagagagg ccattagagg ggaaccacag gcagacaggg tgacaggagg 2941 gactactgac acaaggtgaa gagatggccc agccggacgg ggtggctcac atctgtaatc 3001 ccagcatttt gggagcccga ggtgggtgga tcacttgagg tcaggagttc gaggccccaa 3061 catggcaaaa ccccatctct tctaaaaata caaaaattag ccgggcatga tggcagatgc 3121 ctgtaatccc tgctactcgg gaggctgagg caggaaaatt gcctgaatcc aggaggtgga 3181 ggttgcaatg agacgagatc atgacactgc actccaccct gggcaacaga gcaagagact 3241 gactctgtct cataaaaaaa aagaaaaaag aaaaaaaaaa agagatggct gatggttaaa 3301 gaggggttag cggtcagggg acacataagg gtaaaggcag gaggcaagag gactggcagg 3361 gggctgcccc tgggccaccg ggagcgacac aggatgagca tggagggaaa gggagaaggg 3421 gattctaggg tcccagccta cccaagttgc cctctggttc cacctagcat gccagccaga 3481 ggcccaggaa ggaaccccga gccccccacc aaagctaaag atgagtcgct ggagcctggt 3541 gaggggcagg atgaaggagc tgctggagac agtggtgaac aggaccagag acgggtggca 3601 atggttctgg tgagggtgtg ctgggctggg tggtgggagg ggactcctgg gtctgaggga 3661 ggaggggctg gggcctggac ccctgagtct cagggaggag gaaagggtgg gagtggggct 3721 gtgaccccta ggtctgggag gagtggaggg ttagagctga gagcaggaac tcctaggtca 3781 cagagaggag cggataaatg gggcagagaa cacctgggga gagctggggc ctccactgtg 3841 atgtcctctc tcctgtagga gcccgagcac cttccggggc ttcatgcaga cctactatga 3901 cgaccacctg agggacctgg gtccgctcac caaggcctgg ttcctcgaat ccaaagacag 3961 cctcttgaag aagacccaca gcctgtgccc caggcttgtc tgtggggaca aggaccaggg 4021 ttaaaatgtt cataaaagcc aggtgtggtt gtggcgggtg cctgtagtcc cagctactca 4081 ggaggctgag gtaggatgat ggcttgagcc caggagttcg agaccagcct gggcaacaca 4141 gcgagatctc ttgggggtaa aacaaaaaga aaaaaaaaag ttcatacttc tccaataaat 4201 aaagtctcac ctgtgtccct gtctggatcc ttccccagtg tggccagaaa aaaacccacc 4261 ccactgcctc ccaggaatca atgagtagaa gaggtgacac ctgatgggga aggaagagta 4321 gggaggtcgg gaagggtatc aaggaataac accctattgt gggcttgcgg agaatggggg 4381 acttcaaggc gtgtcagttt caggagggtg agggcaggag cgtgggtgga gtcagcaggt 4441 ccccatgatg gccctcactg agagcttcgc ccttgtctcc tacaagctct gactccattc 4501 ccagtgggca //