APOC4 Color FASTA

The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.

*Display courtesy of GeneSNPs

GAGACGGAGT CTTGCTCTTT CGCCCAGGCT GGACTGCAGT GGCGCGATCT 50 | REPEAT CGGCTCAATG CAAGCTCCAC CTCCCAGGTT CACGCCATTC TCCTGCCTCA 100 | var(92):[-:0.23] GCCTCCCGAG TAGCTAGGAC TACAGGCGCC TGCCACCACG CCTGGCTAAT 150 TTTTCATATT TTTAGTAGAG ATGGGGTTTC ACCGTGTTAG CCAAGATGGT 200 CTCAATCTCC TGACCTCGTG ATCCGCCTGC CTCGGCCTCC CAAAGTGTTG 250 | var(204):[G:0.44] GGGTTACAGG CATGAGCCAC CGCGCCTGGC CAACAGCAAT GATCTTTGAG 300 | REPEAT CACCTATATT GCCAGTCTCC ACGGTAAGAG CTTTCTTCAT TTTTTGTTTT 350 | REPEAT GTTTTGTTTC AAGACAGAGT CTTGCTCTGT CACCCAGGCT GGAGTGCAGT 400 GGTGTGATCG CGGCTCACTG CAGCCTTCAC TTCCCGGGTT CAAGCCATTC 450 TCCTGCCTCA GCCTCCCAAG TAGCTGGGAT TACAGGCACG CATCACTACT 500 TCTGGCTAAT TTTTGTATTT TTAGTAGGGA CAGGGTTTTT CACCATGTTG 550 GCCAGGTTGG TCTCAAACTC CTGGCCTCAT ATGATCTGCC CACCTCGGCC 600 TCCCAAAGTG CTGGGATTAC AGGCGTGAGC CACTGCGCCT TTCTTTGTAT 650 | REPEAT TTGTTCAAGT AATATACTGA AATATGTACT GTGCCTCCCA CTTTATGGAG 700 GAGGAAACTG AGGCCAGCAA ATGAGGCTGT CATGGGAGGT GGAGACAGGA 750 TTTGAACCTG CCTCAGTGCA GGAGGCTCAA GAGCCTCTGT CTTCTCTCAG 800 | var(757):[A:0.01] GGCACTGTGT GGGAGGGTGA GAAGGAGGGA GGCCCACAGA GGCATGACCT 850 CTGATTGCCA CTGTCACCTG GGCCCTGCTC TCTGAAGTCT CTGCCAAGCG 900 GGGAGGTGGC CGGGGGAGGG CCCTGCTCTG TGCAGCCTCC CCTCCCCCGG 950 CCCGCAGAGT TGAGCACAGA GGGACAGAGG CACGGAACCC CCAGAAATGT 1000 | Exon 1 | UTR M 1 CCCTCCTCAG AAACAGGCTC CAGGCCCTGC CTGCCCTGTG CCTCTGCGTG 1050 S L L R N R L Q A L P A L C L C V 18 CTGGTCCTGG CCTGCATTGG GGGTGAGAAG AAGTGGGTGG AGGGATGTGG 1100 L V L A C I G 25 GGCCCACACC TGGTGGGTGT GAGTGTGGCT GTGTGTCCTG TGGCTCTGTA 1150 GCCACGTGAG ACATGAGTAC GGAGTGTGTG CGTTTCATGG CGTGCGTATG 1200 CATGTGCGTG TCGGGGAGTG TGTGTGTCGG TGGCTGAGAG TGAAGTGTGA 1250 ATGTCACATT GGTACAAACT GGGATCATCT GTGTGTGTGC ACGTGCGTGC 1300 GTGGAAGTGG GAGTATGCAG TCGTGGTAAA AAAGTGCATG TCTGTGTGCA 1350 TATGTGTATT TGTGTGCACC TGTCTCTCTG TGGGGTATGT GTGTGCAAAA 1400 TATTTGAGTG TGTGGACATG TGTGAGGGGG TGAGTGTGTG CTGGTGTGTA 1450 CGTCTGTGTT TTGCATATGC ATTTTTTTTT TTTTTTTTGA GACGGAGTCT 1500 | REPEAT CACTCTGTCA CCCAGGCTGG AGTGCAGTGG TAGCAGTGGT GCGATCTTGG 1550 CTCACTGCAT CATCCGCCTA CCCGTTTCAA GGGATTCTCC TGCCTCAGTC 1600 TTCAGAGTAT TTGGGACTAC AGACACACGC CACCATGCCT GGCTAATTTT 1650 | REPEAT TTTTTTTTGA GACGGAGTCT CGCTCTGTTA CCCAGGCTGG AGTGCAGTGG 1700 CGTGATCTTG GCTCACTGCA ACGTCCGCCT CCCGGGTTCA CGCCATTCTC 1750 | var(1702):[A:0.01] | var(1733):[T:0.29] CTGCCTCAGC CTCCCGAGTA GCTGGGACTA CAGGAGCCCA CCACCACGCC 1800 TGGCTAATTT TTTGTATTTT TACTAGAGAC GGGGTTTCGC CGTGTTAGCC 1850 AGGATGGTCT CCATATCCTG ACCTCGTGAT CCGCCTGCCT CGGCCTTCCA 1900 | NOT SCANNED AAGTGCTAGG ATTATAGGCG TGAGCCACTG CGCCTGGCCA ATGCCTGGCT 1950 | REPEAT AATTTTTTTA TATTTTTGGT AGAGACAGGG TTTTGCCATG TTGCCCAGGC 2000 TGGTCTTGAA ATCCTGACCT CAGGTGATCC GCCCGCCTTG GCCTCCCAAA 2050 GTGCTGGGAT TACAGGCATG AGCCACCACG CCCGGCCATG TACTTTATGT 2100 TAAAATGGGA TCATATTCTA GATCAGCATT ATCCAGTAGA AATTTAAATT 2150 TTTAATACAG GGCCAGGCAC GGTGGCTCAT GCCTGTAATC CCAGCACTTT 2200 | REPEAT CGGAGGCCGA GGCGGGTGGA TCGCAAGGTC AGGAGATTTG AGATCATCCT 2250 GGCTAACAGA TGGGTAAAAA CCCATCTCTA CTAAAAATAC AAAAAATTAG 2300 CCATGCATGG TGGCATGCGC CTGTAGTCCC AGCTACTCGG GAGGCTGAGG 2350 CCGGAGAATC ACTTGAACCC GGGAGGCAGA GGTTGCAGTG AGCCGAGATC 2400 GCGCCACTGC ATTCCAACCT GGGTGACAGA GCGAGACTCC GTCTGAAAAA 2450 AAAAAAAAAT TTAACACGTA TGTAGACAAT GTGCAAGGCA CCATTCCATG 2500 | REPEAT TGCATCGTAT GTAGTAACTC TTAATTCTCA CGATAACCCT GAGGTAGATA 2550 TTATTACCCC GTTCTACAAA AGGAGAAACA GTCCTGGGGA GACAGGATAA 2600 | var(2559):[T:0.02] GTCACCGGCC AAGGCACACA GCCAGCTACA TGTGGCCCCC GCGTGACGGC 2650 | var(2623):[T:0.42] | var(2640):[T:0.09] TGGTCTCTGT AGGCGAGGCT TTGTCCAGAT GCGTGGGTAG AAGGTCTGGC 2700 | var(2683):[A:0.01] CCGGAAAGAG GAACTGACAG CAAGGCTAAG CCAATGTCTG CCCCTGGGGG 2750 | var(2703):[T:0.01] CAGAAAGTCA CCTCCTGCTC TCCCTCCACT GTCCACAGAG GTAGCTCAGA 2800 | var(2753):[A:0.01] | var(2767):[T:0.01] CAGGGTGGGG GTCACAGGAG AACGAAGGGA GAAGGGGGTA GTTCCTGGGC 2850 AGCAAAATCA GGTGGTGAAG GGAGGCATCA GAGGATGGCA ATTAGAGAGG 2900 | var(2886):[C:0.01] CCATTAGAGG GGAACCACAG GCAGACAGGG TGACAGGAGG GACTACTGAC 2950 ACAAGGTGAA GAGATGGCCC AGCCGGACGG GGTGGCTCAC ATCTGTAATC 3000 | REPEAT | var(2971):[G:0.04] CCAGCATTTT GGGAGCCCGA GGTGGGTGGA TCACTTGAGG TCAGGAGTTC 3050 GAGGCCCCAA CATGGCAAAA CCCCATCTCT TCTAAAAATA CAAAAATTAG 3100 CCGGGCATGA TGGCAGATGC CTGTAATCCC TGCTACTCGG GAGGCTGAGG 3150 CAGGAAAATT GCCTGAATCC AGGAGGTGGA GGTTGCAATG AGACGAGATC 3200 ATGACACTGC ACTCCACCCT GGGCAACAGA GCAAGAGACT GACTCTGTCT 3250 CATAAAAAAA AAGAAAAAAG AAAAAAAAAA AGAGATGGCT GATGGTTAAA 3300 GAGGGGTTAG CGGTCAGGGG ACACATAAGG GTAAAGGCAG GAGGCAAGAG 3350 GACTGGCAGG GGGCTGCCCC TGGGCCACCG GGAGCGACAC AGGATGAGCA 3400 | var(3380):[A:0.06] TGGAGGGAAA GGGAGAAGGG GATTCTAGGG TCCCAGCCTA CCCAAGTTGC 3450 CCTCTGGTTC CACCTAGCAT GCCAGCCAGA GGCCCAGGAA GGAACCCCGA 3500 | Exon 2 | var(3498):[T:0.42] A C Q P E A Q E G T P 36 GCCCCCCACC AAAGCTAAAG ATGAGTCGCT GGAGCCTGGT GAGGGGCAGG 3550 | var(3502):[T:0.01] | var(3546):[A:0.01] S P P P K L K M S R W S L V R G R 53 ATGAAGGAGC TGCTGGAGAC AGTGGTGAAC AGGACCAGAG ACGGGTGGCA 3600 | var(3592):[T:0.01] M K E L L E T V V N R T R D G W Q 70 ATGGTTCTGG TGAGGGTGTG CTGGGCTGGG TGGTGGGAGG GGACTCCTGG 3650 | REPEAT W F W 73 GTCTGAGGGA GGAGGGGCTG GGGCCTGGAC CCCTGAGTCT CAGGGAGGAG 3700 GAAAGGGTGG GAGTGGGGCT GTGACCCCTA GGTCTGGGAG GAGTGGAGGG 3750 TTAGAGCTGA GAGCAGGAAC TCCTAGGTCA CAGAGAGGAG CGGATAAATG 3800 GGGCAGAGAA CACCTGGGGA GAGCTGGGGC CTCCACTGTG ATGTCCTCTC 3850 TCCTGTAGGA GCCCGAGCAC CTTCCGGGGC TTCATGCAGA CCTACTATGA 3900 | Exon 3 S P S T F R G F M Q T Y Y D 87 CGACCACCTG AGGGACCTGG GTCCGCTCAC CAAGGCCTGG TTCCTCGAAT 3950 | var(3927):[G:0.42] D H L R D L G P L T K A W F L E 103 CCAAAGACAG CCTCTTGAAG AAGACCCACA GCCTGTGCCC CAGGCTTGTC 4000 S K D S L L K K T H S L C P R L V 120 TGTGGGGACA AGGACCAGGG TTAAAATGTT CATAAAAGCC AGGTGTGGTT 4050 | UTR | REPEAT C G D K D Q G 127 GTGGCGGGTG CCTGTAGTCC CAGCTACTCA GGAGGCTGAG GTAGGATGAT 4100 GGCTTGAGCC CAGGAGTTCG AGACCAGCCT GGGCAACACA GCGAGATCTC 4150 TTGGGGGTAA AACAAAAAGA AAAAAAAAAG TTCATACTTC TCCAATAAAT 4200 AAAGTCTCAC CTGTGTCCCT GTCTGGATCC TTCCCCAGTG TGGCCAGAAA 4250 AAAACCCACC CCACTGCCTC CCAGGAATCA ATGAGTAGAA GAGGTGACAC 4300 CTGATGGGGA AGGAAGAGTA GGGAGGTCGG GAAGGGTATC AAGGAATAAC 4350 | var(4346):[T:0.01] ACCCTATTGT GGGCTTGCGG AGAATGGGGG ACTTCAAGGC GTGTCAGTTT 4400 CAGGAGGGTG AGGGCAGGAG CGTGGGTGGA GTCAGCAGGT CCCCATGATG 4450 GCCCTCACTG AGAGCTTCGC CCTTGTCTCC TACAAGCTCT GACTCCATTC 4500 CCAGTGGGCA