APOC1 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of GeneSNPs
CACAGAGTCA GGAAGATTGA GAGGTGAGAG TGCTGAACGG GGAGGGGCTT 50
TGGGGCTAAG GGAAGTGCCC GGGACCCCAC CTGACCCCAA CGCTCACGGG 100
ACAGGGGCAG AGGAGAAAAA CGTGGGTGGA CAGAGGGAGG CAGGCGGTCA 150
GGGGAAGGCT CAGGAGGAGG GAGATCAACA TCAACCTGCC CCGCCCCCTC 200
CCCAGCCTGA TAAAGGTCCT GCGGGCAGGA CAGGACCTCC CAACCAAGCC 250 | Exon 1 | UTR
CTCCAGCAAG GATTCAG
GTT GGTGCTGAGT GCCTGGGAGG GACACCCGCC 300
TACACTCTGC AAGAAACTCA AAAAGGGAGA TGAGGGGATC GTGGGAGGGA 350
GGTAGGGAGG GAGGAGGGTG CCACTGATCC CCTGAACCCC TGCCTCTGCC 400
TCCAGAGTGC CCCTCCGGCC TCGCCATGAG GCTCTTCCTG TCGCTCCCGG 450 | Exon 2 | UTR | var(446):[T:0.01]
                            M  R   L  F  L   S  L  P   8
TCCTGGTGGT GGTTCTGTCG ATCGTCTTGG AAGGTAAAAG TGGGATGGGA 500
V  L  V  V   V  L  S   I  V  L   E                     19
GAATTGCGGA GTTGGAGATT TGGAAGAGTG AAGGTGGCTA CAGGCCTGGG 550 | var(514):[A:0.01] | var(528):[A:0.06]
GTCCCGGCTT AGAGGACCTC TGAGAGCTCC GGGGCCCCTT CTGGGTCGTG 600
GTTGCCTCAT CGTGGTCGGG TGGGTCTCCA GGTTCTCCCA GGCTCAGTCC 650
CGCAGGCGCC AAATCTGCGC AGGAGAGCAC TAGCAACCGA TGACGTATTG 700
AGGCCCACAC CTCTGGGATT GGCTGTCCTG CTTCGACAGC CTTGAAAGTG 750
GGTAAGCTGG GTGGGGGGCT CTGGGAGAGG TCAGTGCTGA GTAAGGCAAT 800 | var(763):[A:0.01]
TCCCAGCAGC TTGAGCCCCA CCAGGTCACT CCAGTATTCC TCCCCATTCT 850 | REPEAT
TTTTTTTTTT TTTTTTTTTC TCTTGAGACG GAGTCTCGCT CTGTCGCCGA 900 | var(880):[A:0.01]
GGCTGGAGTG CAGTGGCGCG ATCTCGGCTC ACTGCAAGCT CCGCCTCCCT 950
GGTTCACGCC ATTCTCCTGC CTCAGCAGGA CTACAGGCGC CCGCCACCGC 1000
GCCCGGCTAA TTTTTTGTAT TTTCAGTAGA GACAGGGTTT CACCGTGGTC 1050
TCGATCTCCT GACTTTGTGA TCCGCCTGCC TCGACCTCCC AAAGTGCTGG 1100 | var(1066):[C:0.23]
GATTACAGGC GTGAGCCACC GCGTCCGGCC ATTCCTCCCC ATTCTAACCA 1150
CATGATCCCC AAGGATCTCT ATCCATCCCG GTATCCCAAC CTAAGGGGGT 1200
TCCAATAACA AATTTTTGGC CGGGCAGGGT GGCTCACGCC TGTAATCCCA 1250 | REPEAT | var(1237):[T:0.30]
GCACTTTGGG AGGCCGAGGC GGGCAGATCA CTTGAGGTCA GGAGTTCGAA 1300
ACCAGCCTGG CCAACATGGT GAAACTTCGT CTCTACTAAA AATACAAAAA 1350
AATTAGCCAG GTGTGGAGGC ACGCGCCTGT AGGCCCAGCT ACTCGGGAGG 1400
CTGAGGCAGG AGAATCACTT GAACCCGGGA GGCGGAGGTT GCAGTGAGCC 1450
GAGATCATAC CACTGCACTC CAGCCTGGCT GACACAGCAA GACTCCGTCT 1500
CAAAACAAAA CAAAACAAAA ATAGCTGGGT GTGGTGGTGC ACACCTGTAA 1550 | REPEAT
TCCCAGCTAC TTGGGAGGCT GAGGCAGGAG AACTGCTTGA ACCCGGGAGG 1600
TGGTGGTTGC AGTAGGCCGA GATCATGCCA CTGCACTCCA GCTTGGGCTA 1650
CAGAGCAAGA CTCCATCTCC AAAAAAAAAA AAAAAAAAAC AAATTTTGAA 1700
CCCCTGCCCA TCTTCCTGGC AGGCCCAGCC CCAGCCCAGG GGACCCCAGA 1750 | Exon 3
                        G  P  A   P  A  Q   G  T  P  D 29
CGTCTCCAGT GCCTTGGATA AGCTGAAGGA GTTTGGAAAC ACACTGGAGG 1800
  V  S  S   A  L  D   K  L  K  E   F  G  N   T  L  E   45
ACAAGGCTCG GGAACTCATC AGCCGCATCA AACAGAGTGA ACTTTCTGCC 1850
D  K  A  R   E  L  I   S  R  I   K  Q  S  E   L  S  A  62
AAGATGCGGT TAGAACCCTT CCCAGGGCAC GGGAGAGCTG GGGTGTGTTT 1900
 K  M  R                                               65
TTGGGTGGAG CCCTGGCAGA TGGTCCAAGA TGAACAGATT GAAAAAAAAA 1950
CAAGTCCTGG AGAGGCTGAC AACATCCCTC TGGTCACACA GCTAGATCTC 2000
AAGGTGCTCA GACTTCAAGG ACAGTTTCCC TGACTCCCAT CCAGGCCATA 2050
TTTTAAAAGA TGGTCTTGGG CTGGGCACGG TGGCTCATGC TTGCAATCCC 2100 | REPEAT
AGCACTTAGG GAGGCCGAGG TGGGCTGATT GCCTGAGGTC AGGAGTTCGA 2150
GACCAGTCTG ACCAACATGG TGAAACCTTG TCTCTACTAA AAATACAAAA 2200
AAATTAGGCA GGCATGGTGG CGTGCACCTG TAATCCCAGC TAGTCGGGAG 2250
GCTGAGGCAG GGGAATTGCT TGAACCAGGA AGGTGGGAGT TACAGTGAGC 2300
CAACATTGTG CCAGCCTGGG TGACAGAAGG AGACTCTGTC TCAAAAAAAA 2350
AAAAAAAAAA AAAAAAAAAC AAGATGGTCT TGCCCAGGTA TGGTGGCTCA 2400 | REPEAT
CACCTGTAAT TCCAGCACTA TGGGAGGCTG AGATGGGAGG ATTGCTTGAG 2450
CCCAGGAGTT CGAGACCAGC CTGACCAACA TGGCGAGATC CTGTCTCCAT 2500
TTAAAAAAAA AAAAAAAAAG ATGGTTTTGT GAGGTAATGA AAATGAAGGC 2550
CCCAAGCTTG GCCAGACCTG GGTCCCCAGG CTGGAGTAGC ACCCCTTCCT 2600 | REPEAT
GTGTGATCTT GACAGAGGGG CATTACTGTG AGCCTCAGTT TCCTCTCCTA 2650 | var(2620):[A:0.07]
TAAACTGGTG GTTCTACAGG GAAGTAAAGG AGCAGGCCTA CAGGGTGTCT 2700
GGTACATGTA GATGCTCAGT ATATCATGAA ACCCACCCTT GCCCCCTTTG 2750
GCAAGTTAGA GAGTCATTCG TTCTTTCAAA AATATTTACT GAGCATCTGC 2800 | REPEAT | var(2770):[A:0.09]
TAAGTGCTGG AAACTGTTTC AATGTGGGGA ATAAAACAGT GAAGAACGTG 2850 | REPEAT
CCGAGCACGG TGGCTCACAC CTGTAACCCC ACCACTTTGG AAGGCCGAGG 2900
TGGGTGGATC ACTTGAGGTC AGGAGTGCGA GAACCCCGTC CCTAATAGAA 2950
ATGCAAAAAA AATTAGCTGG GCATGGTGGC CCATGCCTGT AGTCCCAGCT 3000
CCTTGGGAGG CTGAGGCGAG AGGATTGCTT GAGCCCAGGA GATCTAGGCT 3050
GCAGTGCGCC ATGTTTGTGC CACTGCATTC CAGCCTGGGT AACAGAATGA 3100
GACCCTGTCT CAACAAAAAA AGAAAAGAAA AGAGAAGAAA AGAGAAAAGA 3150
AAGACAGGGA GGGAGGGAGG AAGGAAGGGA GGGAGGGAGG GAAAATAGAG 3200
CCAGGCATAA ACTTAGAAAG ATCGTTTGGA GGCCAGGCAC AATGGCTCAC 3250 | REPEAT
ACCTGTAATC CCAGCACTTT GGGAGGCCAA GGCAAGCAGA TCACCTGAGG 3300
TCAGGAGTTC GAGACCAGCC TAACATGGAG AAACCCTGTC TCTACTAAAA 3350
ATACAAAATT AGCCGGGCGT GGTGGTGCAT TCCTGTAGTC CTAGCTACTC 3400 | var(3377):[A:0.28]
GGGAGCCTGA GGCAGGAGAA TCACTTGAAC CCGGGAGGCG GAGGTTGCAG 3450
TGAGCCGAGA TCATGCCACT GCACTCCAGC CTGGGCGACA AGGCGAGACT 3500 | var(3495):[E002:0.01]
CCATGCCAAA AAAGAAAAAA AACTCCTGGC GCGGTGGCTC ACGCCAGTAA 3550 | REPEAT | var(3531):[A:0.17]
TCCCAGCACT GTGGGAGGCT GAGCAGGCGG ATCACGAGGT CAGGAGTTCG 3600
AGACTAGCCT GCTCAACATA ATGAAACCCT CTCTGTACTA AAAATACAAA 3650
AATTAGCTGG GTGTGGTGGC AGGCACCTGT AGTCCCAGCT ACTCGGGAGG 3700
CTGAGGCAGG AGAATGGCTT GAACCTGGGA GGCAGAGGTT GCAGTGAGCC 3750
GAGACAGTGC CATTGCACTC CAGTCCAGGT GACAGAGCGA AACTCCATCT 3800
CAAAAAAAAA AGGAAGGCAT TGGTAGCAAG AGATGGCAGG CCTTGAAAGC 3850
CAGGCCAGGG TGAAGTGTTT CTTTTTTTTT TTTTTTTTTT TTCTTTTTAA 3900 | REPEAT
ATTTTTTTTT TTGAGACGGA GTCTCGCTCT GTCACCCAGG CTGGATTGCA 3950
GTGGCCTGAT CTCGGCTCAC TGCAAGTTCC GCCTCCCGGG TTCATGCCAT 4000
TCTCCTGCCT CACCCTCCCG AGTAGCTGGG ACTACAGGCA CCTGCCACCA 4050 | var(4020):[T:0.27]
CGCCAGCTAA TTTTTTGTAT TCTTAGTAGA ATGTAGAATT TACTTAGTAG 4100
AATTTTTTGT ATTCTTAGCC AGCATGGTCT CGATCTCCTG ACCTGGTGAT 4150
CCGCCCGCCT CGGCCTCCCA AAGTGCTGGG ATTACAGGCG TGAGCCACGG 4200 | var(4153):[A:0.32]
CGCCCGGCCT TATTTTTTCT TTTTGAGATG TACCCAGACT GGAGTACAGT 4250 | REPEAT | var(4249):[E004:0.26]
GGTGCGATCT CGGCTTACTG GAACCTCCAC CTCCCGGGTT CAGGCAATTC 4300
TCCTGCCTCA GCCTCATGAG TACTTGGAAC TACAGGTGTG TGACACCACA 4350
CATGGTATTT TTTGTATTTT TAGTGAAGAT GACATTTCAC CATGTTGCCC 4400
AGGTTGGTCT CGAACTCCTG ACCTCAAGTG ATCAGCCTAC CTCGGCCTCC 4450 | var(4412):[A:0.01] | var(4436):[G:0.20]
CAAAGTGTTG GGATTACAGG CGTGAGCCAA ATGCCCAGCC AAGGGTAAAG 4500
TGTTTAGACT TCAACGTGCT TTGGTCCATC TGGGAAACTG AGGCACAGAA 4550 | var(4534):[A:0.01]
GTTGGCCCAC CCAGCCCAGC GGTCCTCCTA ATCCCACAGA CAGTGGGGAT 4600
GGAGATTCTG CAAGGGGAAG AGGTGGGAGT CAGGTAGCAG GCAGAATTTG 4650
GACAGCCTGG GAGGTAGCTG CACACAGTGA CCCCCTTCCT TATTCCTCCC 4700
CACAGGGAGT GGTTTTCAGA GACATTTCAG AAAGTGAAGG AGAAACTCAA 4750 | Exon 4
       E   W  F  S  E   T  F  Q   K  V  K   E  K  L  K 80
GATTGACTCA TGAGGACCTG AAGGGTGACA TCCCAGGAGG GGCCTCTGAA 4800 | UTR
  I  D  S                                              83
ATTTCCCACA CCCCAGCGCC TGTGCTGAGG ACTCCCTCCA TGTGGCCCCA 4850 | var(4837):[G:0.04]
GGTGCCACCA ATAAAAATCC TACAG
AAAAT TCTCTCCTGA GTGCTTCTTT 4900 | var(4863):[G:0.02]
ACTCTGGGGA AGGGGCTGCG GGAGAGGGTA GGGGCTTCCA G