APOC4 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of GeneSNPs
GAGACGGAGT CTTGCTCTTT CGCCCAGGCT GGACTGCAGT GGCGCGATCT 50 | REPEAT
CGGCTCAATG CAAGCTCCAC CTCCCAGGTT CACGCCATTC TCCTGCCTCA 100 | var(92):[-:0.23]
GCCTCCCGAG TAGCTAGGAC TACAGGCGCC TGCCACCACG CCTGGCTAAT 150
TTTTCATATT TTTAGTAGAG ATGGGGTTTC ACCGTGTTAG CCAAGATGGT 200
CTCAATCTCC TGACCTCGTG ATCCGCCTGC CTCGGCCTCC CAAAGTGTTG 250 | var(204):[G:0.44]
GGGTTACAGG CATGAGCCAC CGCGCCTGGC CAACAGCAAT GATCTTTGAG 300 | REPEAT
CACCTATATT GCCAGTCTCC ACGGTAAGAG CTTTCTTCAT TTTTTGTTTT 350 | REPEAT
GTTTTGTTTC AAGACAGAGT CTTGCTCTGT CACCCAGGCT GGAGTGCAGT 400
GGTGTGATCG CGGCTCACTG CAGCCTTCAC TTCCCGGGTT CAAGCCATTC 450
TCCTGCCTCA GCCTCCCAAG TAGCTGGGAT TACAGGCACG CATCACTACT 500
TCTGGCTAAT TTTTGTATTT TTAGTAGGGA CAGGGTTTTT CACCATGTTG 550
GCCAGGTTGG TCTCAAACTC CTGGCCTCAT ATGATCTGCC CACCTCGGCC 600
TCCCAAAGTG CTGGGATTAC AGGCGTGAGC CACTGCGCCT TTCTTTGTAT 650 | REPEAT
TTGTTCAAGT AATATACTGA AATATGTACT GTGCCTCCCA CTTTATGGAG 700
GAGGAAACTG AGGCCAGCAA ATGAGGCTGT CATGGGAGGT GGAGACAGGA 750
TTTGAACCTG CCTCAGTGCA GGAGGCTCAA GAGCCTCTGT CTTCTCTCAG 800 | var(757):[A:0.01]
GGCACTGTGT GGGAGGGTGA GAAGGAGGGA GGCCCACAGA GGCATGACCT 850
CTGATTGCCA CTGTCACCTG GGCCCTGCTC TCTGAAGTCT CTGCCAAGCG 900
GGGAGGTGGC CGGGGGAGGG CCCTGCTCTG TGCAGCCTCC CCTCCCCCGG 950
CCCGCAGAGT TGAGCACAGA GGGACAGAGG CACGGAACCC CCAGAAATGT 1000 | Exon 1 | UTR
                                                   M   1
CCCTCCTCAG AAACAGGCTC CAGGCCCTGC CTGCCCTGTG CCTCTGCGTG 1050
S  L  L  R   N  R  L   Q  A  L   P  A  L  C   L  C  V  18
CTGGTCCTGG CCTGCATTGG GGGTGAGAAG AAGTGGGTGG AGGGATGTGG 1100
 L  V  L   A  C  I  G                                  25
GGCCCACACC TGGTGGGTGT GAGTGTGGCT GTGTGTCCTG TGGCTCTGTA 1150
GCCACGTGAG ACATGAGTAC GGAGTGTGTG CGTTTCATGG CGTGCGTATG 1200
CATGTGCGTG TCGGGGAGTG TGTGTGTCGG TGGCTGAGAG TGAAGTGTGA 1250
ATGTCACATT GGTACAAACT GGGATCATCT GTGTGTGTGC ACGTGCGTGC 1300
GTGGAAGTGG GAGTATGCAG TCGTGGTAAA AAAGTGCATG TCTGTGTGCA 1350
TATGTGTATT TGTGTGCACC TGTCTCTCTG TGGGGTATGT GTGTGCAAAA 1400
TATTTGAGTG TGTGGACATG TGTGAGGGGG TGAGTGTGTG CTGGTGTGTA 1450
CGTCTGTGTT TTGCATATGC ATTTTTTTTT TTTTTTTTGA GACGGAGTCT 1500 | REPEAT
CACTCTGTCA CCCAGGCTGG AGTGCAGTGG TAGCAGTGGT GCGATCTTGG 1550
CTCACTGCAT CATCCGCCTA CCCGTTTCAA GGGATTCTCC TGCCTCAGTC 1600
TTCAGAGTAT TTGGGACTAC AGACACACGC CACCATGCCT GGCTAATTTT 1650 | REPEAT
TTTTTTTTGA GACGGAGTCT CGCTCTGTTA CCCAGGCTGG AGTGCAGTGG 1700
CGTGATCTTG GCTCACTGCA ACGTCCGCCT CCCGGGTTCA CGCCATTCTC 1750 | var(1702):[A:0.01] | var(1733):[T:0.29]
CTGCCTCAGC CTCCCGAGTA GCTGGGACTA CAGGAGCCCA CCACCACGCC 1800
TGGCTAATTT TTTGTATTTT TACTAGAGAC GGGGTTTCGC CGTGTTAGCC 1850
AGGATGGTCT CCATATCCTG ACCTCGTGAT CCGCCTGCCT CGGCCTTCCA 1900 | NOT SCANNED
AAGTGCTAGG ATTATAGGCG TGAGCCACTG CGCCTGGCCA ATGCCTGGCT 1950 | REPEAT
AATTTTTTTA TATTTTTGGT AGAGACAGGG TTTTGCCATG TTGCCCAGGC 2000
TGGTCTTGAA ATCCTGACCT CAGGTGATCC GCCCGCCTTG GCCTCCCAAA 2050
GTGCTGGGAT TACAGGCATG AGCCACCACG CCCGGCC
ATG TACTTTATGT 2100
TAAAATGGGA TCATATTCTA GATCAGCATT ATCCAGTAGA AATTTAAATT 2150
TTTAATACAG GGCCAGGCAC GGTGGCTCAT GCCTGTAATC CCAGCACTTT 2200 | REPEAT
CGGAGGCCGA GGCGGGTGGA TCGCAAGGTC AGGAGATTTG AGATCATCCT 2250
GGCTAACAGA TGGGTAAAAA CCCATCTCTA CTAAAAATAC AAAAAATTAG 2300
CCATGCATGG TGGCATGCGC CTGTAGTCCC AGCTACTCGG GAGGCTGAGG 2350
CCGGAGAATC ACTTGAACCC GGGAGGCAGA GGTTGCAGTG AGCCGAGATC 2400
GCGCCACTGC ATTCCAACCT GGGTGACAGA GCGAGACTCC GTCTGAAAAA 2450
AAAAAAAAAT TTAACACGTA TGTAGACAAT GTGCAAGGCA CCATTCCATG 2500 | REPEAT
TGCATCGTAT GTAGTAACTC TTAATTCTCA CGATAACCCT GAGGTAGATA 2550
TTATTACCCC GTTCTACAAA AGGAGAAACA GTCCTGGGGA GACAGGATAA 2600 | var(2559):[T:0.02]
GTCACCGGCC AAGGCACACA GCCAGCTACA TGTGGCCCCC GCGTGACGGC 2650 | var(2623):[T:0.42] | var(2640):[T:0.09]
TGGTCTCTGT AGGCGAGGCT TTGTCCAGAT GCGTGGGTAG AAGGTCTGGC 2700 | var(2683):[A:0.01]
CCGGAAAGAG GAACTGACAG CAAGGCTAAG CCAATGTCTG CCCCTGGGGG 2750 | var(2703):[T:0.01]
CAGAAAGTCA CCTCCTGCTC TCCCTCCACT GTCCACAGAG GTAGCTCAGA 2800 | var(2753):[A:0.01] | var(2767):[T:0.01]
CAGGGTGGGG GTCACAGGAG AACGAAGGGA GAAGGGGGTA GTTCCTGGGC 2850
AGCAAAATCA GGTGGTGAAG GGAGGCATCA GAGGATGGCA ATTAGAGAGG 2900 | var(2886):[C:0.01]
CCATTAGAGG GGAACCACAG GCAGACAGGG TGACAGGAGG GACTACTGAC 2950
ACAAGGTGAA GAGATGGCCC AGCCGGACGG GGTGGCTCAC ATCTGTAATC 3000 | REPEAT | var(2971):[G:0.04]
CCAGCATTTT GGGAGCCCGA GGTGGGTGGA TCACTTGAGG TCAGGAGTTC 3050
GAGGCCCCAA CATGGCAAAA CCCCATCTCT TCTAAAAATA CAAAAATTAG 3100
CCGGGCATGA TGGCAGATGC CTGTAATCCC TGCTACTCGG GAGGCTGAGG 3150
CAGGAAAATT GCCTGAATCC AGGAGGTGGA GGTTGCAATG AGACGAGATC 3200
ATGACACTGC ACTCCACCCT GGGCAACAGA GCAAGAGACT GACTCTGTCT 3250
CATAAAAAAA AAGAAAAAAG AAAAAAAAAA AGAGATGGCT GATGGTTAAA 3300
GAGGGGTTAG CGGTCAGGGG ACACATAAGG GTAAAGGCAG GAGGCAAGAG 3350
GACTGGCAGG GGGCTGCCCC TGGGCCACCG GGAGCGACAC AGGATGAGCA 3400 | var(3380):[A:0.06]
TGGAGGGAAA GGGAGAAGGG GATTCTAGGG TCCCAGCCTA CCCAAGTTGC 3450
CCTCTGGTTC CACCTAGCAT GCCAGCCAGA GGCCCAGGAA GGAACCCCGA 3500 | Exon 2 | var(3498):[T:0.42]
                  A   C  Q  P  E   A  Q  E   G  T  P   36
GCCCCCCACC AAAGCTAAAG ATGAGTCGCT GGAGCCTGGT GAGGGGCAGG 3550 | var(3502):[T:0.01] | var(3546):[A:0.01]
S  P  P  P   K  L  K   M  S  R   W  S  L  V   R  G  R  53
ATGAAGGAGC TGCTGGAGAC AGTGGTGAAC AGGACCAGAG ACGGGTGGCA 3600 | var(3592):[T:0.01]
 M  K  E   L  L  E  T   V  V  N   R  T  R   D  G  W  Q 70
ATGGTTCTGG TGAGGGTGTG CTGGGCTGGG TGGTGGGAGG GGACTCCTGG 3650 | REPEAT
  W  F  W                                              73
GTCTGAGGGA GGAGGGGCTG GGGCCTGGAC CCCTGAGTCT CAGGGAGGAG 3700
GAAAGGGTGG GAGTGGGGCT GTGACCCCTA GGTCTGGGAG GAGTGGAGGG 3750
TTAGAGCTGA GAGCAGGAAC TCCTAGGTCA CAGAGAGGAG CGGATAAATG 3800
GGGCAGAGAA CACCTGGGGA GAGCTGGGGC CTCCACTGTG ATGTCCTCTC 3850
TCCTGTAGGA GCCCGAGCAC CTTCCGGGGC TTCATGCAGA CCTACTATGA 3900 | Exon 3
           S  P  S  T   F  R  G   F  M  Q   T  Y  Y  D 87
CGACCACCTG AGGGACCTGG GTCCGCTCAC CAAGGCCTGG TTCCTCGAAT 3950 | var(3927):[G:0.42]
  D  H  L   R  D  L   G  P  L  T   K  A  W   F  L  E   103
CCAAAGACAG CCTCTTGAAG AAGACCCACA GCCTGTGCCC CAGGCTTGTC 4000
S  K  D  S   L  L  K   K  T  H   S  L  C  P   R  L  V  120
TGTGGGGACA AGGACCAGGG TTAAAATGTT CATAAAAGCC AGGTGTGGTT 4050 | UTR | REPEAT
 C  G  D   K  D  Q  G                                  127
GTGGCGGGTG CCTGTAGTCC CAGCTACTCA GGAGGCTGAG GTAGGATGAT 4100
GGCTTGAGCC CAGGAGTTCG AGACCAGCCT GGGCAACACA GCGAGATCTC 4150
TTGGGGGTAA AACAAAAAGA AAAAA
AAAAG TTCATACTTC TCCAATAAAT 4200
AAAGTCTCAC CTG
TGTCCCT GTCTGGATCC TTCCCCAGTG TGGCCAGAAA 4250
AAAACCCACC CCACTGCCTC CCAGGAATCA ATGAGTAGAA GAGGTGACAC 4300
CTGATGGGGA AGGAAGAGTA GGGAGGTCGG GAAGGGTATC AAGGAATAAC 4350 | var(4346):[T:0.01]
ACCCTATTGT GGGCTTGCGG AGAATGGGGG ACTTCAAGGC GTGTCAGTTT 4400
CAGGAGGGTG AGGGCAGGAG CGTGGGTGGA GTCAGCAGGT CCCCATGATG 4450
GCCCTCACTG AGAGCTTCGC CCTTGTCTCC TACAAGCTCT GACTCCATTC 4500
CCAGTGGGCA