List of haplotypes found in best reconstruction, with frequencies in parentheses. 1: C A T T A G T T G G C C C T I C A T T T G C T C T A C C A T I C D A A A A I G A A G G G G T T C C I C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A C T T C A A A C G G C I C G C T G G T A T C G A T C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T C C A T C A A T T T A T G T G C T T T A T A G G A T (1) 2: C G T T T T T T G A C C C T I C A T G T G C T C T G T C C T I G D A A A A I G G T G A A G C C C C D T G G A T G A A A G A A D T C C A A A C C G A T A T T C A C A C T C C A A T C A G C I C G C T G G A A T C G C T C G G A I G A T C C A C C G T C A T T G A C T A T C A G C G G A G G T A G T C C T C G C C A T T A A T C T D T G T G C T T C A T A G G G T (1) 3: C G A T T T T T G A C C G T D C A T G C G C T C T G T C A T I C D A A A A D G G A G A G G T C T A I T G G A T G A A G A A A D C A C A A A C C G A T A A T C C C A C T T C T A A C G A C D T A C T A G A A T T G A T C A G A I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C C C G C T G T T T G C T T A C G T G C T A C G T A G T G T (1) 4: C G A T T T C T G A C C G T I C A T G C G C T C T G C C C G I G I G A A A I G A T G G A G C T C C D C T T A T G A G G G G A I T C C G G G A T A A C G T T T A C D T C C C A A T C A G C I C G C T G G A A T C G A T C A G T I G A C G T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T C G C C A T T A A T T C A T G T G C T T C A G A G G G T (1) 5: C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A G C T C A D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A T T T C T A A C G A C D T A C T A G A A T T G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C A T A G G G T (1) 6: C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A G C T T A D C G T A T G A A G A G A D T A C A A A C C G A T A A T C C C A T T T C T A A C G A C D T A C T A G A A T T G A T C A G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C T T C C A C T A A T T T A T G T G C T T T A T A G G A T (1) 7: C G A T T T T T G A C C C T D T G T G C G C T C T G T C C G I C D A A A A I G A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A A C G A T A T T C A C A C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G T T G T T T G C T C A C A A A T C A C A T A A G G T (1) 8: C A T T A G T T A A C C G C I C A T G T G C T C T G T C A T I G D A A A A D C G T A A G G T C C C I T G G C T G G A G G A G I C C C G A G C T A G C G T T T A C D C T C T A A T T A G D I C G C T G G A A T C G A T C G G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T T A T A G G A T (2) 9: T A T T A G T T G G C C C T I C A T G T G C T C T G C C A G I G D G A A A D G G T G A G G T C C C I T G G A T G A G G G A A I C C C G G G C C A A C G T T T A C D C T C C A A T C A G C I C G C T G G A A T C G A T C G G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A C G T G C T T C A T A G G A T (1) 10: T A T T A G T T G A T G C T I T G T G T G C T C T G T A A T D G D A G A A D C G T G A G G T C C C I T G G A G T A A G G A A D T A C A A A C C G A T A T T C A C A C T T C T A A C G A C D T A C T A G A A T T G C C C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A T G T G C T T C A G A G G G T (1) 11: C G T C T T T T G A C C G T I C A T G T A T G A C A C C A T I G D A A A A D G G T G A G G T C C C I T G G A T G A A A G A A I C C C G G G A T A A C G T T C A C A C T T C A A A C G A C D T A A C A A A A G C A A T T G A A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A C A A A T C A C A T A G G G G (1) 12: C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A G C T C A D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A T T T C T A A C G A C D T A C T A G A A T T G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C A G A G G A T (1) 13: T A T T A G T T G A T G C T I C A T G T G C T C T G C A C T D G D A G A A I C A A G G A G C T C C D C T T A G T A A G G G A D T A C G A A C C G A T A T T C A C A T T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C C A T T A A T C T A T G T G C T T C G T A G G G T (1) 14: C G A T T T T T G A C C G T D C A T G C G C T C T G T C A T I C D A A A A D G G A G A G G T C T A I T G G A T G A A G A A A D C A C A A A C C G A T A A T C C C A C T T C T A A C G A C D T A C T A G A A T T G A T C G G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C A T A G G A T (2) 15: C G A T T T C T G A C C G T I C A T G C G C T C T G C C C G I G I G A A A I G A T G G A G C T C C D C T T A T G A G G G G A I T C C G G G A T A A C G T T T A C D T C C C A A T C A G C I C G C T G G A A T C G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C A G A G G G T (1) 16: C A T T A G T T G G C C C T I C A T T T G C T C T G T C C T I C I A A A A I G A A G G A G C T C C D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A C T T C A G A C G G C I C G C T G G T A T C G A T C G G A I G G C G T C C T G T C G C C T G G C G C T A G G C A A G A C G G G T C C T T C C A C T A A T T T A T G T G C T T C A T A G G G T (1) 17: C G A T T T T T G A C C G T D T G T G C G C T C T G T C C G I C I A A A A I G A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A C C G A T A T T C A C A C T T C T A A C G A C D T A C T A G A G T T G C T C G G A I G G C G T C C T A T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A C T A A T T T A T G T G C T T C A T A G G G T (1) 18: T A T T A G T T G A T G C T I C A T T T G C T C T G T C C T I C I A A A A I G A A G G A G C T C C D C T T A T G A A G A G A I C C C G G G C T A A C G T C T A T D C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G T T G T T T G C T C A C A A A T C A C A T A A G G T (1) 19: C G A T T T T T G A C C C T D T G T G C G C T C T G T C C G I C I A A A A I G A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A A C G A T A T T C A C A C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A C A A A T C A C A T A A G G T (1) 20: C G A T T T T T G A C C G T D C A C G C G C T C T G T C C T I C I A A A A I G A A G G A G C T C A D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A C T C C A A T C A G C I C G C T G G A A T C G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C G T A G G G T (1) 21: C G A T T T C T G A C C G T I C A T G C G C T C T G C C C T I C I A A A A I G A A G G A G C T C C D C T T A T G A G G A G A I C C C G G A A C A A C G T T T A C D C T C C A A T C A G C I C G C T G G A A T C G C T C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T C C A T C A A T T C D T G T G C T T T A T A G G A T (1) 22: C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A A C T C A D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A T T T C T A A C G A C I C G C T G G A A T C G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C G T A G T G T (1) 23: C G T C T T T G G A C C G T I C A T G C G C T C T G T C C G I C I A A A A I G A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A C C G A T A T T C A C A C T C C A A T C A G C I C G C T G G A A T C G C T C G G A I G A T C C A C C G T C A T T G A C T A T C A G C G G A G G T A G T C C T C G C C A T T A A T C T A T G T G C T T C G T A G T G T (1) 24: T A T T T G T T G A T G C T I C A T T T G C T C T G T C C T I C D A A A A I G A A G G A G C T C C D C T T A T G A A G A G A I C C C G G G C T A A C G T C T A T D C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G T T G T T T G C T C A C A A A T C A C A T A A G G T (1) 25: C A T T A G T T G A C C C T I C A T G T G C T C T A C C A T I G D A A A A D G G T G A G G T C C C I T G G A T G A A G G A A I C C C G G G A T A A C G T C T A T D C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A C A A A T C A C G T A G T G T (2) 26: C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A G A I G A A G G A G C T T A D C T T A T G A A G A G A D T A C A A A C C G A T A A T C C C A T T T C T G A C G A C D T A C T A G A A T T G A T C G G A I G G C G T C C T A T C G C C T G G C G C T A A G C A A A A C G G G T C C T T C C A C T A A T T T A T G T G C T T C A T A G G G T (1) 27: C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A G C T C A D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A C T C C A A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G T T G T T T G C T C A C A A A T C A C A T A A G G T (1) 28: C G T T T T T G G G C C C T I C A T T T G C T C T G T C C T I C I A A A A I G A A G G A G C T C C D C T T A T G A A G A G A D T A T A A A C C G A T A T T C A C A C T C C A A A C G A C I T A A C A A A A G C A A T T G A A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A C A A A T C A C A T A G G A G (2) 29: T A T T A G T T G A T G C T I C A T G T G C T C T G C A C T D C D A G A A D C A A G G A A C T C C D C T T A G T A A G G G A D C A C G A A C C G A T A T T C A C A T T T C T A A C G A C D T A C T A G A A T T G C C C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C T T C C A T T A A T T T A T G T G C T T C G T A G G G T (1) 30: C G A T T T T T G A C C G T D C A T G C G C T C T G T C A T I G D A A A A I G G A G A G G T C C A I T G G A T G A A G G A A I T A C A G G A T A A C G T T T A C D C T C C A A T C A G C I C G C T G G A A T C G A T C G G A I G G C G T C C T A T C G C C T G G C G C T A A G C A A A A C G G G T C T T T C C A C C A A T T C D T G T G C T T C A T A G G G T (1) 31: C G A T T T C T G A C C C T I C A T G C G C T C T G C C A G I G D G A A A D G G T G A G G T C C C I T G G A T G A G G G A A I C C C G G G A T A A C G T T T A C D C C C C A A T C A G C D C G C T G G A A T C G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C A T A G G G T (1) 32: C G T T A T T T G A C C G T I C A T G T A T G A C A C C A T I G D A A A A D G G T G A G G T C C C I T G G A T G A A A G A A I C C C G G G C T A A C G T T T A C D C T T C A A A C G A C D T A A T A A A A G C A A T C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A C A A A T C A C G T A G T G T (1) 33: C G A T T T T T G A C C G T D C A T G C G C T C T G T C A T I G D A A A A I G G A G A G G T C C A I T G G A T G A A G G A A I T A C A A G A T G A T G T T T A C A C T C C A A T C A G C I C G C T G G A A T C G A T C G G A I G G C G T C C T A T C G C C T G G C G C T A A G C A A A A C G G G T C C T T C C A C C A A T T T D T G T G C T T C G T A G G G T (1) 34: C G A T T T C T G A C C G T I C A T G C G C T C T G C C C G I C D G A A A I G A T G G A G C T C C D C T T A T G A G G A G A D C C C G G A A C A A C A T T C A C D C C C C A A T C A G C I C G C T G G A A T C G C T C A G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T C C A T T A A T T C A T G T G C T T T A T A G G A T (1) 35: C G A T T T T T G A C C C T D C A T G C G C T C T G T C C T I C I A A A G I G A A G G A G C T C C D C T T A T G A A G A A A D T A C A A A C C G A T A T T C A C A C T T C A G A C G A C D T A C T A G A G T T G C T C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T C C A T C A A T T T D T G T G C T T C G T A G G G T (1) 36: C G T C T T T G G A C C G T I C A T G C G C T C T G T C C G I C D A A A A I G A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A C C G A T A T T C A C A C T C C A A T C A G C I C G C T G G A A T C G C T C G G A I G A T C C A C C G T C A T T G A C T A T C A G C G G A G G T A G T C C T C G C C A T T A A T C T A T G T G C T T C G T A G T G T (1) 37: C G T T A T T T G A T C C T I C A T G T A C T C C G T C C T I C I A A A G I G A A G G A G C T C C D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A C T C C A G A C G A C D T A C T A G A G T T G C T C G G T I A A C G T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T C C A C T A A T T T A T G T G C T T T A T A G G A T (1) 38: C A T T A G T T G A C G C T I C A T G T G T G A T A C C C T I C I A A A G I G A A G G A G C T C C D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A C T T C A G A C G G C I C G C T G G T A T C G A T C G G A I G G C G T C C T G T C G C C T G G C G C T A G G C A A G A C G G G T C C T T C C A C T A A T T T A T G T G C T T C A T A G G G T (1) 39: C G A T T T C T G A C C G T I C A T G C G C T C T G C C A G I G D G A A A D G G T G A G G T C C C I T G G A T G A G G G A A I C C C G G G A T A A C G T T T A C D C C C C A A T C A G C D C G C T G G A A T C G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T T A T A G G A T (1) 40: C G T T T T T G G G C C C T I C A T T T G C T C T G T C C T I C D A A A A I G A A G G A G C T C C D C T T A T G A A G A G A D T A T A A A C C G A T A T T C A C A C T C C A A A C G A C I T A A C A A A A G C A A T T G A A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A C A A A T C A C A T A G G A G (1) 41: C G A T T T T T G A C C G T D T G T G C G C T C T G T C C G I C I A A A A I G A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A C C G A T A T T C A C A C T T C T G A C G A C D T A C T A G A G T T G C T C G G A I G G C G T C C T A T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A C T A A T T T A T G T G C T T C A T A G G G T (1) 42: C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A G C T T A D C T T A T G A A G A G A D T A C A A A C C G A T A A T C C C A T T T C T A A C G A C D T A C T A G A A T T G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C A G A G G G T (1) 43: C G T T A G T T G A C C C T I C A T G T G C T C T G C C A T I G D A A G A D G G T G A G G T C C C I T G G A T G A A G G A A I C C C G A G A T A A C G T C C A C A C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G T T G T T T G C T C A C A A A T C A C G T A G G G T (1) 44: C G A T T T T T G G C C G T D C A T G C G C T C T G T C C T I C D A A G G I G A A G G A G C T T A D C T T C T G A A G A G A D T A C A A A C C G A T A T T C C C A C T T C A G A C G A C D T A C T A G A A T T G A T C A G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T C C A T C A A T T T D T G T G C T T C A T A A G G T (1) Summary of best reconstruction (numbers refer to the list of haplotypes given above) D001: (1,2) D002: (3,4) D003: (5,6) D004: (7,8) D005: (9,10) D006: (11,12) D007: (13,14) D008: (15,14) D009: (16,17) D010: (18,19) D011: (20,21) D012: (22,23) D013: (24,25) D014: (26,8) D015: (27,28) D016: (29,30) D033: (31,32) D034: (33,34) D035: (35,28) D036: (36,25) D037: (37,38) D038: (39,40) D039: (41,42) D040: (43,44) Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: D001 C A T T A G T T G (G) C C C T I C A T (T) T G C T C T (A) (C) C (A) T I (C) D A A A A I G (A) (A) G G (G) G (T) (T) C C (I) (C) (T) (T) A T G A A G A (G) A D T (A) C A A A C C G A T A T T C A C A C T T C A A A C G G C I C [G] C T G G T A T C G A T C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T C C A T (C) A A T T T (A) T G T G C T T (T) A T A G G (A) T C G T T T T T T G (A) C C C T I C A T (G) T G C T C T (G) (T) C (C) T I (G) D A A A A I G (G) (T) G A (A) G (C) (C) C C (D) (T) (G) (G) A T G A A A G (A) A D T (C) C A A A C C G A T A T T C A C A C T C C A A T C A G C I C G C T G G A A T C G C T C G G A I G A T C C A C C G T C A T T G A C T A T C A G C G G A G G T A G T C C T C G C C A T (T) A A T C T (D) T G T G C T T (C) A T A G G (G) T D002 C G A T T T T T G A C C G T (D) C A T G C G C T C T G T C A T I (C) D A A A A [(D)] G G A G A G G T C T A I T G G A T G A A G (A) A A D (C) A C (A) A A C C G A T A A T C C C A C T T C T A A C G A C D T A C T A G A A T T G A T C A G (A) I (A) A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C (C) C G C (T) (G) T T (T) (G) (C) T (T) A (C) G T G C T (A) C (G) T A G (T) G T C G A T T T C T G A C C G T (I) C A T G C G C T C T G C C C G I (G) I G A A A [(I)] G A T G G A G C T C C D C T T A T G A G G (G) G A I (T) C C (G) G G A T A A C G T T T A C D T C C C A A T C A G C I C G C T G G A A T C G A T C A G (T) I (G) A C G T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C (T) C G C (C) (A) T T (A) (A) (T) T (C) A (T) G T G C T (T) C (A) G A G (G) G T D003 C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A G C T (C) A D C (T) T A T G A A G A G A D T A C A A A C C G A T A [(T)] T C (A) C A T T T C T A A C G A C D T A C T A G A A T T G A T C A G (T) I A A (C) (G) T C C T G T C G C C T G G C G C T A G G C A (G) G A C G G G C C (T) (C) (G) C C A (T) T A A T T T A T G T G C T T (C) A T A G G (G) T C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A G C T (T) A D C (G) T A T G A A G A G A D T A C A A A C C G A T A (A) T C (C) C A T T T C T A A C G A C D T A C T A G A A T T G A T C A G (A) I [G] A (T) (C) T C C T G T C G C C T G G C G C T A G G C A (A) G A C G G G C C (C) (T) (T) C C A (C) T A A T T T A T G T G C T T (T) A T A G G (A) T D004 C G A T T T T T G A C C (C) T D T G T G C G C T C T G T C C G I C D A A A A I [(G)] A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A (A) C (G) A T A T T C A C A C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G (T) T G T T T G C T C A C A A A T C A (C) A T A A G G T C A T T A G T T A A C C (G) C I C A T G T G C T C T G T C A T I G D A A A A D [(C)] G T A A G G T C C C I T G G C T G G A G G A G I C C C G A G (C) T (A) G C G T T T A C D C T C T A A T T A G D I C G C T G G A A T C G A T C G G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G (C) C A T T A A T T T A T G T G C T T (T) A T A G G A T D005 T A T T A G T T G (G) C C C T I (C) (A) T G T G C T C T G (C) C A G I G D G A A A D G G T G A G G T C C C I T G G A T G A G G G A A I (C) C C (G) G G C C A A C G T T T A C D C T C C A A T C A G C (I) C G C T G G A A T C G A (T) C G G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C (C) (A) T T (A) (A) (T) T (T) A (C) G T G C T T C A (T) A G G (A) T T A T T A G T T G (A) T G C T I (T) (G) T G T G C T C T G (T) A A T D [G] D A G A A D C G T G A G G T C C C I T G G A G T A A G G A A D (T) A C (A) A A C C G A T A T T C A C A C T T C T A A C G A C (D) T A C T A G A A T T G C (C) C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C (T) (G) T T (T) (G) (C) T (C) A (T) G T G C T T C A (G) A G G (G) T D006 C G T (C) T T T T G A C C G T I C A T G T A T G A C A C C A T I G D A A A A D G G T G A G G T C C C I T G G A T G A A [A] G A A I C C C G G G (A) T A A C G T T C A C A C T T C A A A C G A C D T A A (C) A A A A G C A A T (T) G (A) (A) I G A (T) (C) T C C T G T C G C C T G G C G C T A G G C A (A) G A C G G G C C (C) C G C T G T T T G C T C A C A A A T C A C A (T) A G G (G) (G) C G A (T) T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A G C T C A D C [T] T A T G A A G A G A D T A C A A A (C) C G A T A T T C A C A T T T C T A A C G A C D T A C (T) A G A A T T G A T (C) A (G) (T) I A A (C) (G) T C C T G T C G C C T G G C G C T A G G C A (G) G A C G G G C C (T) C G C C A T T A A T T T A T G T G C T T C A (G) A G G (A) (T) D007 T A T T A G T T G A T G C T (I) C A T G T G C T C T G C A C T D [(G)] D A G A A (I) C A A G G A G C T C C D C T T A G T A A G (G) G A D [(T)] A C (G) A A C C G A T A T T C A C A T T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C C A T T A A T (C) T A T G T G C T T C G T A G G G T C G A T T T T T G A C C G T (D) C A T G C G C T C T G T C A T I (C) D A A A A (D) G G A G A G G T C T A I T G G A T G A A G (A) A A D [(C)] A C (A) A A C C G A T A A T C C C A C T T C T A A C G A C D T A C T A G A A [T] T G A T C G G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A [C] G G G C C T C G C C A T T A A T (T) T A T G T G C T T C A T A G G A T D008 C G A T T T C T G A C C G T (I) C A T G C G C T C T G C C C G I (G) I G A A A [(I)] G A T G G A G C T C C D C T T A T G A G G (G) G A I (T) C C (G) G G A T A A C G T T T A C D T C C C A A T C A G C I C G C T G G A A T C G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C A G A G G G T C G A T T T T T G A C C G T (D) C A T G C G C T C T G T C A T I (C) D A A A A [(D)] G G A G A G G T C T A I T G G A T G A A G (A) A A D [(C)] A C (A) A A C C G A T A A T C C C A C T T C T A A C G A C D T A C T A G A A [T] T G A T C G G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A [C] G G G C C T C G C C A T T A A T T T A T G T G C T T C A T A G G A T D009 C A T T A G T T G (G) C C C T I C A T (T) T G C T C T G T C C T I C I A A A A I G A A G G A G C T C C D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A C T T C A (G) A C G G C I C [G] C T G G T (A) T C G (A) T C G G A I G G C G T C C T G T C G C C T G G C G C T A G G C A A G A C G G G T C C T T C C A C T A A T T T A T G T G C T T C A T A G G G T C G A T T T T T G (A) C C G T D T G T (G) C G C T C T G T C C G I C I A A A A I [G] A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A C C G A T A T T C A C A C T T C T (A) A C G A C D T A C T A G A (G) T T G (C) T C G G A I G G C G T C C T A T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A C T A A T T T A T G T G C T T C A T A G G G T D010 T A T T [A] [G] T T G A T G C T I C A T T T G C T C T G T C C T I C I A A A A I G A A G G A G C T C C D C T T A T G A A G A G A I C C C G G G C T A A C G T C T A T D C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G (T) T G T T T G C T C A C A A A T C A C A T A A G G T C G A T T T T T G A C C [C] T D T G T G C G C T C T G T C C G I C I A A A A I [G] A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A [A] C [G] A T A T T C A C A C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G (C) T G T T T G C T C A C A A A T C A C A T A A G G T D011 C G A T T T T T G A C C G T D C A (C) G C G C T C T G T C C T I C I A A A A I G A A G G A G C T C A D C T T A T G A A G A G A (D) T A C A (A) A C C G A (T) (A) T T (C) A C (A) C T C C A A T C A G C I C G C T G G A A T C G A T C (A) G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T (T) A A T T T (A) T G T G C T T C (G) T A G G G T C G A T T T C T G A C C G T I C A (T) G C G C T C T G C C C T I C I A A A A I G A A G G A G C T C C D C T T A T G A G G A G A (I) C C C G (G) [A] A C A A (C) (G) T T (T) A C (D) C T C C A A T C A G C I C G C T G G A A T C G C T C (G) G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T C C A T (C) A A T T [C] (D) T G T G C T T T (A) T A G G A T D012 C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A (A) C T C A D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A (T) T (T) C (T) A (A) C (G) (A) C I C G C T G G A A T C G A T C (A) G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C G T A G T G T C G T C T T T [G] G A C C G T I C A T G C G C T C T G T C C G I C I A A A A I G A A G A A (G) C T C C D C T T A T G A A A G G A D T A C A A A C C G A T A T T C A C A (C) T (C) C (A) A (T) C (A) (G) C I C G C T G G A A T C G C T C (G) G A I G A T C C A C C G T C A T T G A C T A T C A G C G G A G G T A G T C C T C G C C A T T A A T C T A T G T G C T T C G T A G T G T D013 T A T T [T] [G] T T G A T G C T I C A T T T G C T C T G T C C T I C D A A A A I G A A G G A G C T C C D C T T A T G A A G A G A I C C C G G G C T A A C G T C T A T D C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G (T) T G T T T G C T C A C A A A T C A C A T A A G G T C A T T A G T T G A C C C T I C A T G T G C T C T A C C A T I G D A A A A D G G T G A G G T C C C I T G G A T G A A G G A A I C C C G G G A T A A C G T C T A T D C T T C T A A C G A C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G (C) T G T T T G C T C A C A A A T C A C G T A G T G T D014 C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A (G) A I G A A G G A G C T T A D C (T) T A T G A A G A G A D T A C A A A C C G A T A A T C (C) C A T T T C T (G) A C G A C D T A C T A G A A T T G A T C G G (A) I (G) (G) C G T C C T (A) T C G C C T G G C G C T A (A) G C A (A) (A) A C G G G (T) C (C) (T) (T) C C A C T A A T T T A T G T G C T T (C) A T A G G (G) T C A T T A G T T A A C C [G] C I C A T G T G C T C T G T C A T I G D A A (A) A D [C] G T A A G G T C C C I T (G) G C T G G A G G A G I C C C G A G [C] T [A] G C G T T T (A) C D C T C T A (A) T T A G D I C G C T G G A A T C G A T C G G (T) I (A) (A) C G T C C T (G) T C G C C T G G C G C T A (G) G C A (G) (G) A C G G G (C) C (T) (C) (G) C C A T T A A T T T A T G T G C T T (T) A T A G G (A) T D015 C G A T T T T T G (A) C C [G] T D C A T G C G C T C T G T C C T I C I A A A A I [G] A A G G A G C T C (A) D C T T A T G A A G A G A D T A C A A A C C [G] A T A T T C A C A C T C C A A A C G A C D T A C T A G A A T T G (C) T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G (T) T G T T T G C T C A C A A A T C A C A T A A G G T C G T T T T T G G (G) C C C T I C A T T T G C T C T G T C C T I C I A A A A I G A A G G A G C T C (C) D C T T A T G A A G A G A D T A T A A A C C G A T A T T C A C A C T C C A A A C G A C [I] T A A C A A A A G C A (A) T T G A A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G (C) T G T T T G C T C A C A A A T C A C A T A G G A G D016 T A T T A G T T G A T G C T I C A T G T G C T C T G C A C T D [C] D A G A A [(D)] C A A G G A (A) C T C C D C T T A G T A A G [G] G A (D) [C] A C [G] (A) A C C G A (T) (A) T T (C) A C (A) T T T C T A A C G A C D T A C T A G A A T T G C (C) C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C (C) T T C C A T (T) A A T T T (A) T G T G C T T C (G) T A G G G T C G A T T T T T G A C C G T D C A T G C G C T C T G T C A T I G D A A A A [(I)] G G A G A G (G) T C C A I T G G A T G A A G G A A (I) T A C A (G) [G] A T [A] A (C) (G) T T (T) A C (D) C T C C A A T C A G C I C G C T G G A A T C G A (T) C G G A I G G C G T C C T A T C G C C T G G C G C T A A G C A A A A C G G G T C (T) T T C C A C (C) A A T T [C] (D) T G T G C T T C (A) T A G G G T D033 C G A T (T) T C T G A C C (C) T I C A T G C G C T C T G C C A G I G D G A A A D G G T G A G G T C C C I T G G A T G A G G G A A I C C C G G G (A) T A A C G T T T A C D C C C C A A T C A G C [D] C G C T G G A A T C G A T C A G T I A A (C) (G) T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C (T) C G C C A T T A A T T T A T G T G C T T C (A) T A G (G) G T C G T T (A) T T T G A C C (G) T I C A T G T A T G A C A C C A T I G D A A A A D G G T G A G G T C C C I T G G A T G A A [A] G A A I C C C G G G (C) T A A C G T T T A C D C T T C A A A C G A C D T A A T A A A A G C A A T C G G A I G A (T) (C) T C C T G T C G C C T G G C G C T A G G C A [A] G A C G G G C C (C) C G C T G T T T G C T C A C A A A T C A C (G) T A G (T) G T D034 C G A T T T T T G A C C G T D C A T G C G C T C T G T C A (T) I G D (A) A A A [I] G G (A) G A G G T C C A I T G G A T G A A G G A A (I) T A C A (A) (G) A T [G] A (T) (G) T T (T) A C (A) C (T) C C A A T C A G C I C G C T G G A A T C G A T C (G) G A I G G C G T C C T A T C G C C T G G C G C T A A G C A A A A C G G G T C (C) T T C C A C (C) A A T T [(T)] (D) T G T G C T T C (G) T A G G G T C G A T T T C T G A C C G T I C A T G C G C T C T G C C C (G) I C D (G) A A A I G A (T) G G A G C T C C D C T T A T G A G G A G A (D) C C C G (G) (A) A C A A (C) (A) T T (C) A C (D) C (C) C C A A T C A G C I C G C T G G A A T C G C T C (A) G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C (T) T T C C A T (T) A A T T [(C)] (A) T G T G C T T T (A) T A G G A T D035 C G A T T T T T G (A) C C C T D C A T G C G C T C T G T C C T I C I A A A G I G A A G G A G C T C C D C T T A T G A A G A (A) A D T A C A A A C C G A T A T T C A C A C T T C A G A C G A C D T A C T A G A (G) T T G (C) T C G G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T C C A T C A A T T [T] D T G T G C T T C (G) T A G G G T C G T T T T T G G (G) C C C T I C A T T T G C T C T G T C C T I C I A A A A I G A A G G A G C T C C D C T T A T G A A G A (G) A D T A T A A A C C G A T A T T C A C A C T C C A A A C G A C [I] T A A C A A A (A) G C A (A) T T G A A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A C A A A T C A C (A) T A G G A G D036 C G T C T T T [G] G A C C G T I C A T G C G C T C T G T C C G I C D A A A A I G A A G A A G C T C C D C T T A T G A A A G G A D T A C A A A C C G A T A T T C A C A C T (C) C (A) A (T) C (A) (G) C I C G C T G G A A T C G C T C G G A I G A T C C A C C G T C A T T G A C T A T C A G C G G A G G T A G T C C T C G C C A T T A A T C T A T G T G C T T C G T A G T G T C A T T A G T T G A C C C T I C A T G T G C T C T A C C A T I G D A A A A D G G T G A G G T C C C I T G G A T G A A G G A A I C C C G G G A T A A C G T C T A T D C T (T) C (T) A (A) C (G) (A) C D T A C T A G A A T T G C T C G G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A C A A A T C A C G T A G T G T D037 C [G] T T A T T T G A (T) (C) C T I C A T G T (A) (C) (T) (C) (C) (G) (T) C C T I C I A A A G I G A A G G A G C T C C D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A C T (C) C A G A C G A C D T (A) C T A G A (G) T T G (C) T C G G (T) I (A) A C G T C C T G T C G C C T G G C G C T A G G C A [A] G A C G G G C C T [T] [T] C C A C T A A T T T A T G T G C T T (T) A T A G G (A) T C A T T A G T T G A (C) (G) C T I C A T G T (G) (T) (G) (A) (T) (A) (C) C C T I C I A A A G I G A A G G A G C T C C D C T T A T G A A G A G A D T A C A A A C C G A T A T T C A C A C T (T) C A G A C G G C I C (G) C T G G T (A) T C G (A) T C G G (A) I (G) G C G T C C T G T C G C C T G G C G C T A G G C A A G A C G G G T C C T T C C A C T A A T T T A T G T G C T T (C) A T A G G (G) T D038 C G A T T T C T G (A) C C (G) T I C A T G C G C T C T G C C A G I G D G A A A D G G T G A G G T C C C I T G G A T G A G G G A A I C C C G G G (A) T A A C G T T T A C D C C C C A A T C A G C (D) C G C T G G A A T C G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T (T) A T A G G A T C G T T T T T G G (G) C C (C) T I C A T T T G C T C T G T C C T I C D A A A A I G A A G G A G C T C C D C T T A T G A A G A G A D T A T A A A (C) C G A T A T T C A C A C T C C A A A C G A C (I) T A A C A A A A G C A A T T G A A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C C C G C T G T T T G C T C A C A A A T C A (C) A T A G G A G D039 C G A T T T T T G A C C G T D T G T G C G C T C T G T C C G I C I A A A A I [G] A A G A A G C T (C) C D C T T A T G A A A G G A D T A C A A A C C G A T A (T) T C (A) C A C T T C T (G) A C G A C D T A C T A G A G T T G C T C G G A I G G C G T C C T A T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A C T A A T T T A T G T G C T T C A (T) A G G G T C G A T T T T T G A C C G T D C A T G C G C T C T G T C C T I C I A A A A I G A A G G A G C T (T) A D C T T A T G A A G A G A D T A C A A A C C G A T A (A) T C (C) C A T T T C T (A) A C G A C D T A C T A G A A T T G A T C A G T I A A C G T C C T G T C G C C T G G C G C T A G G C A G G A C G G G C C T C G C C A T T A A T T T A T G T G C T T C A (G) A G G G T D040 C G T T A G T T G (A) C C (C) T I C A T G T G C T C T G C C A T I G D A A G A D G G T G A G G T C (C) (C) I T G G (A) T G A A G G (A) A I C C C G A G A T A A C G T C C (A) C A C T T C T A A C G A C D T A C T A G A A T T G (C) T C (G) G A I G A T C T C C T G A C G C C T G G C G C T A G G C A A G A C G G G C C C C G (T) T G T T T G C T C A C A A A T C A C (G) T A (G) G G T C G A T T T T T G (G) C C (G) T D C A T G C G C T C T G T C C T I C D A A G G I G A A G G A G C T (T) (A) D C T T (C) T G A A G A (G) A D T A C A A A C C G A T A T T C (C) C A C T T C A G A C G A C D T A C T A G A A T T G (A) T C (A) G A I G A T C T C C T G T C G C C T G G C G C T A G G C A A G A C G G G C C T T T (C) C A T C A A T T [T] D T G T G C T T C (A) T A (A) G G T Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = D001 = A = = A G = = = (G) = = = = = = = = (T) = = = = = = (A) (C) = (A) = = (C) = = = = ? ? = (A) (A) = G (G) = (T) (T) = = (I) (C) (T) (T) = = ? = = ? A (G) = = ? (A) = = = = ? ? ? = = = = = = = = = = = T = = = A = G = ? = = ? = = = = T = = = = A = ? ? = = ? = = = = T C = T = = = G ? C T G G C G C T = = G C A = = A C G ? G = = = T T = = = = (C) = = = ? ? (A) = = = = = = = (T) = = = = = (A) = = G = = T T = = = (A) = = = = = = = = (G) = = = = = = (G) (T) = (C) = = (G) = = = = ? ? = (G) (T) = A (A) = (C) (C) = = (D) (T) (G) (G) = = ? = = ? G (A) = = ? (C) = = = = ? ? ? = = = = = = = = = = = C = = = T = A = ? = = ? = = = = A = = = = C = ? ? = = ? = = = = C A = C = = = A ? T G A C T A T C = = C G G = = G T A ? T = = = C G = = = = (T) = = = ? ? (D) = = = = = = = (C) = = = = = (G) = D002 = = = = = = T = = = = = = = ? = = = = = = = = = = = T = A T = (C) D A = ? ? ? = G A = A G = T C T A I T G G = = = = A = (A) A = D (C) A = (A) A A C C G = T ? A = C ? ? ? C T T = T = A = G A = D T A = = A = = = = T = = = = = = (A) ? (A) = ? ? ? = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = (C) = = = (T) (G) = = (T) (G) (C) = (T) = (C) ? ? ? ? ? (A) = (G) T = = (T) = = = = = = = = C = = = = = = = ? = = = = = = = = = = = C = C G = (G) I G = ? ? ? = A T = G A = C T C C D C T T = = = = G = (G) G = I (T) C = (G) G G A T A = C ? T = T ? ? ? T C C = A = T = A G = I C G = = G = = = = C = = = = = = (T) ? (G) = ? ? ? = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = (T) = = = (C) (A) = = (A) (A) (T) = (C) = (T) ? ? ? ? ? (T) = (A) G = = (G) = = D003 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = (T) = = = = = = = = = = = = = = = = = = = = = = = ? = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = ? = (C) (G) = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = (T) (C) (G) = = = (T) = = = = = = = = = = = = = = (C) = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = (G) = = = = = = = = = = = = = = = = = = = = = = = ? = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = ? = (T) (C) = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = (C) (T) (T) = = = (C) = = = = = = = = = = = = = = (T) = = = = = (A) = D004 = G A = T T = = G = = = (C) T ? T G = = C = = = = = = = = C G = C = = = = ? I ? ? A G = A = C T = = D C T T ? = ? A = A = G A D T A = A = A (A) C (G) A T A = = C = = A = = T C T = A C G A C D T A = = A = = = = T = C = = = = A = G = T C = = = = = A = = = = = = = = = = = = = = = = A = = = = = = = = C = = (T) T G = = T G C = C = C A A A T C A (C) = = = A = G = = A T = A G = = A = = = (G) C ? C A = = T = = = = = = = = A T = G = = = = ? D ? ? T A = G = T C = = I T G G ? = ? G = G = A G I C C = G = G (C) T (A) G C G = = T = = D = = C T A = T T A G D I C G = = G = = = = C = A = = = = T = A = C G = = = = = T = = = = = = = = = = = = = = = = G = = = = = = = = T = = (C) C A = = A A T = T = T G T G C T T (T) = = = G = A = D005 = = = = = = = = = (G) C C = = = (C) (A) = = = = = = = = = (C) C = G I ? = G A = = = G = = = = = = = = = = = = = = = T G = G = = = = I (C) C = (G) G G = = A = C G = = T = = D = = C = A = T = A G = (I) C G = ? ? = = = ? C = A (T) = = = T ? A = C G = = = = = = = = = = = = = = = = = = = = = = G = = ? = = = = = T = = = (C) (A) = = (A) (A) (T) = (T) = (C) ? ? ? ? = = = = (T) = = = (A) = = = = = = = = = = (A) T G = = = (T) (G) = = = = = = = = = (T) A = T D ? = A G = = = C = = = = = = = = = = = = = = = G T = A = = = = D (T) A = (A) A A = = G = T A = = C = = A = = T = T = A = G A = (D) T A = ? ? = = = ? T = C (C) = = = A ? G = T C = = = = = = = = = = = = = = = = = = = = = = A = = ? = = = = = C = = = (T) (G) = = (T) (G) (C) = (C) = (T) ? ? ? ? = = = = (G) = = = (G) = D006 = = T (C) = = = = = = = = = = I ? ? = = T A T G A C A C = A = = G D = = = = D = G T = A G ? T C = C I T ? G = = = = = ? G A = I C C = G G G (A) T A = C G = = = = = = C = = = A = = = = = = = = = A (C) = A = = G C A = = (T) G (A) (A) = G = (T) (C) = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = (C) = = = T G = = T G C = C = C A ? A T C A = = (T) = = = (G) (G) = = A (T) = = = = = = = = = = D ? ? = = C G C T C T G T = C = = C I = = = = I = A A = G A ? C T = A D C ? T = = = = = ? A G = D T A = A A A (C) C G = T A = = = = = = T = = = T = = = = = = = = = C (T) = G = = T T G = = (C) A (G) (T) = A = (C) (G) = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = (T) = = = C A = = A A T = T = T G ? G C T T = = (G) = = = (A) (T) D007 T A T = A G = = = = T G C = (I) = = = = T = = = = = = C A C = D ? = = G = = (I) C A = = G A = C T C C D C T T = G T = = = (G) G = = ? = = (G) = = = = = = = = T = = A = = T = = = = = = = = = = = = = = = = = = = ? = = C = = = = A = G = T C = = = = = = = = = = = = = = = = = = = = = = A = = ? = = = = = C = = = = = = = = = = (C) = = = = = = = = = = G = = = = G = C G A = T T = = = = C C G = (D) = = = = C = = = = = = T C A = I ? = = A = = (D) G G = = A G = T C T A I T G G = T G = = = (A) A = = ? = = (A) = = = = = = = = A = = C = = C = = = = = = = = = = = = = = = = = = = ? = = A = = = = T = A = C G = = = = = = = = = = = = = = = = = = = = = = G = = ? = = = = = T = = = = = = = = = = (T) = = = = = = = = = = A = = = = A = D008 = = = = ? ? C ? = ? = = ? = (I) = = = ? = = = = = = = C = C G = (G) I G = = = ? = A ? ? G A = C T C C ? C T T = = = = G = ? G = I ? ? = (G) G G A T A = C G T = T A = D T C C = A = T = A G = I C G = = G = = = ? C = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? = G = = = G = = = = = ? ? T ? = ? = = ? = (D) = = = ? = = = = = = = T = A T = (C) D A = = = ? = G ? ? A G = T C T A ? T G G = = = = A = ? A = D ? ? = (A) A A C C G = T A A = C C = A C T T = T = A = G A = D T A = = A = = = ? T = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? = T = = = A = D009 = A T = A G = = = (G) = = C = ? C A = (T) T = = = = = = = = = T = = = = = = = = ? = = = G = = = = = = = = = = = = = = = G A = ? = = = = = = = = = ? = = = = = = = = = = = = = A (G) = = = G = I C ? = = G = T (A) = C = (A) = = = = = ? = = = = = = = = G = = = = = = = = = = = = = = = = = A = = = = = = T = C T T = = = = = = = = = = = = = = = = = = = = = = = = = = = G A = T T = = = (A) = = G = ? T G = (G) C = = = = = = = = = G = = = = = = = = ? = = = A = = = = = = = = = = = = = = = A G = ? = = = = = = = = = ? = = = = = = = = = = = = = T (A) = = = A = D T ? = = A = A (G) = T = (C) = = = = = ? = = = = = = = = A = = = = = = = = = = = = = = = = = G = = = = = = C = T C G = = = = = = = = = = = = = = = = = = = = = = = = = = D010 T A T = ? ? = = = = T G ? = I C A = T T = = = = = = = = = T = = = = = = = = ? = = = ? = = = = = = = = = = = = = = = G A = = I C C = G G G ? T ? = C G = ? T = T D = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = (T) = = = = = ? = = = = = = = = = = = = = = = = = = = C G A = ? ? = = = = C C ? = D T G = G C = = = = = = = = = G = = = = = = = = ? = = = ? = = = = = = = = = = = = = = = A G = = D T A = A A A ? C ? = T A = ? C = C A = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = (C) = = = = = ? = = = = = = = = = = = = = = = = = = = D011 = = = = = = T = = = = = = = D = = (C) = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = ? = = = = (D) T A = A (A) ? C = G = (T) (A) = = (C) = = (A) = = = = = = = = = = = = = = = = = = = = = = = A = = (A) = T = A = C G = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = C G = = = = (T) = = = = ? (A) = = = = = = = C (G) = = = = G = = = = = = = C = = = = = = = I = = (T) = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = ? = = = = (I) C C = G (G) ? A = A = (C) (G) = = (T) = = (D) = = = = = = = = = = = = = = = = = = = = = = = C = = (G) = A = G = T C = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = T T = = = = (C) = = = = ? (D) = = = = = = = T (A) = = = = A = D012 = = A T = = = ? ? ? = = = = D = = = = = = = = = = = = = = T = = = = = = = = = = = = G = (A) = = = A = = = = = = = = = G A = = = = = = = = = = = = = = = = = = = = = (T) = (T) = (T) = (A) = (G) (A) = = = = = = = = = = = = = A = = (A) = T = A = C G T C = T = = = G C C T G G C G C T = = G C A G = A C G = G = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = T C = = = ? ? ? = = = = I = = = = = = = = = = = = = = G = = = = = = = = = = = = A = (G) = = = C = = = = = = = = = A G = = = = = = = = = = = = = = = = = = = = = (C) = (C) = (A) = (T) = (A) (G) = = = = = = = = = = = = = C = = (G) = A = G = T C C A = C = = = A T T G A C T A T C = = C G G A = G T A = T = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = D013 T = = = ? ? = = = = T G = = = = = = T = = = = = = G T = C = = C = = = = = I = A A = G A = C T = = D C T T = = = = = = A G = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = A = = A G = = C = = = ? ? = = = = C C = = = = = = G = = = = = = A C = A = = G = = = = = D = G T = A G = T C = = I T G G = = = = = = G A = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = G = = G T = = D014 = G A = T T = = G = = = ? T D = = = = C = = = = = = = = C = = C ? ? = (G) = I ? A A G G A ? C T T A D C (T) T A = = A = = A G A D T A = A = A ? ? ? A T A A = C (C) = A T = T C T (G) A C G A C D T A = = A = = = = T = = = = = = (A) = (G) (G) = = = = = = (A) = = = = = = = = = = = = = (A) = = = (A) (A) = = = = = (T) = (C) (T) (T) = = = C = = = = = = = = = = = = = = (C) = = = = = (G) = = A T = A G = = A = = = ? C I = = = = T = = = = = = = = A = = G ? ? = (A) = D ? G T A A G ? T C C C I T (G) G C = = G = = G A G I C C = G = G ? ? ? G C G T = T (A) = D C = C T A (A) T T A G D I C G = = G = = = = C = = = = = = (T) = (A) (A) = = = = = = (G) = = = = = = = = = = = = = (G) = = = (G) (G) = = = = = (C) = (T) (C) (G) = = = T = = = = = = = = = = = = = = (T) = = = = = (A) = D015 = = A = = = = T = (A) = = ? = D = = = G C = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = (A) = = = = = = = = = = = = = = = = C = = = = = ? = = = = = = = = = = = = = = = = = = = = ? = = C T = G = = T T G (C) = C = G = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = A = G T = = T = = = = G = (G) = = ? = I = = = T T = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = (C) = = = = = = = = = = = = = = = = T = = = = = ? = = = = = = = = = = = = = = = = = = = = ? = = A C = A = = G C A (A) = T = A = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = G = A G D016 T A T = A G = = = = T G C = I = = = = T = = = = = = C A C = D ? = = G = = ? C A = = G A (A) C T = C D C T T = G T = = = ? G = (D) ? ? ? ? (A) ? C C ? = (T) (A) = = (C) = = (A) T = T = T = A = G A = D T A = = A = = = = T = C (C) = = = = = = A T C = = = = G = = = = = = = = = = = = = G = = = = G = = = = = C = (C) = = = = = T (T) = = = = ? (A) = = = = = = = = (G) = = = = = = C G A = T T = = = = C C G = D = = = = C = = = = = = T C A = I ? = = A = = ? G G = = A G (G) T C = A I T G G = T G = = = ? A = (I) ? ? ? ? (G) ? A T ? = (C) (G) = = (T) = = (D) C = C = A = T = A G = I C G = = G = = = = C = A (T) = = = = = = G C G = = = = A = = = = = = = = = = = = = A = = = = A = = = = = T = (T) = = = = = C (C) = = = = ? (D) = = = = = = = = (A) = = = = = = D033 ? ? A = (T) = C = = = = = (C) = = = = = = C G C T C T G = = = G = = = G = = = = = = = = = = = = = = = = = = = = = ? = ? ? = = = = = = = = = = (A) = = = = = = = = = = = = C C = = = T = A G = ? C G C = G G = = T = G = = = A = T = A = (C) (G) = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = (T) = = = C A = = A A T = T = T G T G C T T = (A) = = = (G) = = ? ? T = (A) = T = = = = = (G) = = = = = = T A T G A C A = = = T = = = A = = = = = = = = = = = = = = = = = = = = = ? = ? ? = = = = = = = = = = (C) = = = = = = = = = = = = T T = = = A = G A = ? T A A = A A = = G = A = = = G = A = G = (T) (C) = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = (C) = = = T G = = T G C = C = C A A A T C A = (G) = = = (T) = = D034 = = = = = = T = = = = = = = D = = = = = = = = = = = T = A (T) = G = (A) = = = ? ? G (A) = A G = T C = A I T G G = = = = A = G A = (I) T A = A (A) (G) ? ? ? = (T) (G) = = (T) = = (A) = (T) = = = = = = = = = = = = = = = = = = = = = A = = (G) = = = = G C G = = = = A = = = = = = = = = = = = = A = = = = A = = = = = T = (C) = = = = = C (C) = = = = ? (D) = = = = = = = C (G) = = = = G = = = = = = = C = = = = = = = I = = = = = = = = = = = C = C (G) = C = (G) = = = ? ? A (T) = G A = C T = C D C T T = = = = G = A G = (D) C C = G (G) (A) ? ? ? = (C) (A) = = (C) = = (D) = (C) = = = = = = = = = = = = = = = = = = = = = C = = (A) = = = = A T C = = = = G = = = = = = = = = = = = = G = = = = G = = = = = C = (T) = = = = = T (T) = = = = ? (A) = = = = = = = T (A) = = = = A = D035 = = A = = = = T = (A) = = = = D = = = G C = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = C = = = = = = = = = = = = = = = = = T = = G = = = = = ? = = C T = G = (G) T T G (C) = C = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T T T = C A = C A A T = ? D T G T G C T T = (G) = = = = G T = = T = = = = G = (G) = = = = I = = = T T = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = T = = = = = = = = = = = = = = = = = C = = A = = = = = ? = = A C = A = (A) G C A (A) = T = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C C G = T G = T T G C = ? A C A A A T C A = (A) = = = = A G D036 = G = C T T = ? = = = = G = = = = = = C = = = = = G T = C G ? C = = = = ? ? = A A = = A = C T = = D C T T = = = = = A = G = D T A = A A A C C G = T A = T C = C A = = (C) = (A) = (T) = (A) (G) = I C G = = G = = = = C = = = = = = = = = = = = C A = C = T = A T T G A C T A T C = = C G G = = G T A = T = = T = = = C A = = A A T C T = T G T G C T T = = = = = = = = = A = T A G = ? = = = = C = = = = = = T = = = = = A C = A T ? G = = = = ? ? = G T = = G = T C = = I T G G = = = = = G = A = I C C = G G G A T A = C G = C T = T D = = (T) = (T) = (A) = (G) (A) = D T A = = A = = = = T = = = = = = = = = = = = T C = T = A = G C C T G G C G C T = = G C A = = A C G = G = = C = = = T G = = T G C T C = C A A A T C A = = = = = = = = D037 ? ? = = = T = = = = (T) (C) = = = = = = = = (A) (C) (T) (C) (C) (G) (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = A = D T (A) = = A = A (G) ? T = (C) = = = = (T) = (A) A = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = C = T ? ? ? = = = = = = = = = = = = = = = = = (T) = = = = = (A) = ? ? = = = G = = = = (C) (G) = = = = = = = = (G) (T) (G) (A) (T) (A) (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = G = I C (G) = = G = T (A) ? C = (A) = = = = (A) = (G) G = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = T = C ? ? ? = = = = = = = = = = = = = = = = = (C) = = = = = (G) = D038 = = A = = = C T = (A) = = (G) = = = = = G C = = = = = = C = A G = ? = G = = = D = G T = A G = T C = = I T G G = = = = G = G A = I C C C G G G (A) T A = C G = ? T = = D = C = = = = T = A G = (D) C G C T G G = = T = G = = C A G T = A = C G = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = T = = = C A = = A A T = T = T G T G C T T (T) = = = = = = T = = T = = = T G = (G) = = (C) = = = = = T T = = = = = = T = C T = ? = A = = = I = A A = G A = C T = = D C T T = = = = A = A G = D T A T A A A (C) C G = T A = ? C = = A = T = = = = A = G A = (I) T A A C A A = = G = A = = T G A A = G = T C = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = C = = = T G = = T G C = C = C A A A T C A (C) = = = = = = G D039 = = = = = = = = = = = = = = = T G = = = = = = = = = = = = G = = = = = = = = ? = = = A = = = = (C) C = = = = = = = = = A G = = = = = = = = = = = = = = = (T) = = (A) = = C = = = = (G) = = = = = = = = = = = = = G = = = C = = G = A = G G = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = C A = = = = = = = = = = = = T = = = = = = = = ? = = = G = = = = (T) A = = = = = = = = = G A = = = = = = = = = = = = = = = (A) = = (C) = = T = = = = (A) = = = = = = = = = = = = = A = = = A = = A = T = A A = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = (G) = = = = = D040 = = T = A G = = = (A) = = (C) = I = = = = T = = = = = = C = A = = G = = = = ? D = G T = ? G = T C (C) (C) I T G G (A) = = = = = G (A) ? I C C ? ? = G A T A = C G ? ? = (A) = = ? ? = = T A = = = = = = = = = = = = = = = = = (C) = = (G) = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = C C G (T) T G = T T G C = ? A C ? ? ? ? C A = (G) = = (G) = = = = = A = T T = = = (G) = = (G) = D = = = = C = = = = = = T = C = = C = = = = ? I = A A = ? A = C T (T) (A) D C T T (C) = = = = = A (G) ? D T A ? ? = A C C G = T A ? ? = (C) = = ? ? = = A G = = = = = = = = = = = = = = = = = (A) = = (A) = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = T T T (C) C A = C A A T = ? D T ? ? ? ? T T = (A) = = (A) = = = Phase probabilities at each site with phase known positions indicated by = = 0.99 = = 0.98 0.98 = = = 0.82 = = = = = = = = 0.84 = = = = = = 0.51 0.5 = 0.5 = = 0.5 = = = = = = = 0.5 0.52 = 1 0.51 = 0.52 0.51 = = 0.5 0.51 0.52 0.51 = = = = = = 1 0.52 = = = 0.52 = = = = = = = = = = = = = = = = = = 0.94 = = = 0.94 = 0.94 = = = = = = = = = 0.97 = = = = 0.91 = = = = = = = = = = 1 1 = 1 = = = 1 = 1 1 1 1 1 1 1 1 = = 1 1 1 = = 1 1 1 = 1 = = = 1 1 = = = = 0.51 = = = = = 0.51 = = = = = = = 0.53 = = = = = 0.52 = = = = = = = 1 = = = = = = = = = = = = = = = = = = = 1 = 1 1 = 0.8 1 1 = = = = = 1 0.98 = 0.97 1 = 1 0.99 1 1 0.93 1 1 0.99 = = = = 1 = 0.52 1 = 1 0.54 0.97 = 0.65 1 1 1 1 1 = 1 = 1 = 1 = = = 1 1 1 = 1 = 1 = 1 1 = 1 1 1 = = 1 = = = = 1 = = = = = = 0.52 = 0.51 = = = = = = = = = = = = = = = = = = = = = = = = = 0.96 = = = = = = = = 0.56 = = = 0.52 0.5 = = 0.52 0.51 0.52 = 0.52 = 0.5 = = = = = 0.53 = 0.52 1 = = 0.51 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.55 = = = 0.59 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.54 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.88 = = = 0.59 0.59 = = = = = = = = = = = = = = = = = = = = = = 0.86 = = = = = = = = 0.9 0.88 0.88 = = = 0.84 = = = = = = = = = = = = = = 0.76 = = = = = 0.59 = = 1 1 = 0.96 0.94 = = 1 = = = 0.53 1 = 1 1 = = 1 = = = = = = = = 1 1 = 1 = = = = = 1 = = 1 1 = 1 = 1 1 = = 1 1 0.94 1 = = = 1 = 1 = 1 1 1 1 1 = 1 = 1 0.6 0.99 0.55 1 1 1 = = 1 = = 1 = = 1 1 1 = 1 1 1 1 1 1 1 1 = = 1 = = = = 1 = 1 = = = = 0.95 = 0.91 = 1 1 = = = = = 1 = = = = = = = = = = = = = = = = 0.93 = = = = = = = = 0.95 = = 0.51 1 1 = = 1 0.98 1 = 1 = 1 1 1 1 1 1 1 0.89 = = = 1 = 0.94 = = = = = = = = = = 0.56 1 1 = = = 0.51 0.51 = = = = = = = = = 0.5 1 = 1 1 = = 1 1 = = = 1 = = = = = = = = = = = = = = = 1 1 = 0.99 = = = = 1 0.76 1 = 0.67 1 1 = = 1 = 1 1 = = 1 = = 1 = = 1 = 1 = 1 = 1 1 = 0.64 1 1 = = = = = = = 1 = 1 0.53 = = = 0.98 = 0.99 = 0.94 0.94 = = = = = = = = = = = = = = = = = = = = = = 0.98 = = = = = = = = 0.93 = = = 0.51 0.5 = = 0.51 0.5 0.5 = 0.53 = 0.51 = = = = = = = = 0.52 = = = 0.81 = = = 1 0.55 = = = = = = = = = = 1 = = = = 1 1 1 1 1 1 1 1 = 1 = = 1 1 = = = = 1 = 1 1 = 1 1 = 1 1 = 1 1 1 = 1 = = = = = = 1 1 = 1 1 1 = 1 1 1 0.73 1 1 = 1 1 = = = = = = 1 = = = 1 = = = = = = = = = 1 0.56 = 1 = = 1 1 1 = = 0.56 1 0.56 0.86 = 0.95 = 0.68 0.68 = = = = = = = = = = = = = = = = = = = = = = 0.71 = = = = = = = = 0.83 = = = 1 1 = = 1 1 1 = 1 = 1 1 = 1 1 1 1 = = 0.57 = = = 0.75 0.56 1 1 1 = 0.94 0.95 = = = = 1 1 0.95 = 0.9 = = = = 1 = = = = = = 1 1 1 = 1 = = = 1 = = 0.53 1 1 = = 0.97 1 = 1 0.99 1 1 0.95 1 1 0.99 = 1 1 = = = 0.52 1 = = = = = 0.65 = = = = = = = = 1 = = 0.97 = = 1 = = = = = = = = = = = = = = = = = = = = = = 1 = = = = 1 = 1 = 1 1 = = = = = = = = = = = = = = = = = = = = = = 0.98 = = = = = = = = 0.93 = = = = = = = = = = 0.84 = = = = = = = = = = 0.94 = = = = 1 = = = = = = = 1 = = = = = = = 0.89 = = = = = = = = = = = 1 = 1 1 = 0.8 1 1 = = = = = 1 = = 0.97 1 = 1 0.99 1 1 = 1 1 0.99 = = = = 1 = = 1 = 1 = = = 0.65 1 1 1 1 1 = 1 1 1 = 1 0.96 = 1 1 1 1 = 1 = 1 = 1 1 = 1 1 1 = = 1 = = = = 1 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1 = = = 1 = = 0.99 1 = 1 0.96 = = = 0.71 = = 1 = = 1 1 = 0.71 1 = = = = = = = = = 1 = = = = = = = = = = = = 1 = = = = = = = = = = = = = = = 1 1 = = = = = = = = = = = = = = = = = = = = = = = = = 1 0.52 = = = 0.96 = 0.96 0.96 = = = 0.97 = 0.97 0.84 = 0.96 = 0.84 = = = = = = = = = = = = = = 1 = = = = = = = = = = = = = = = = = 0.99 = = = = = = 0.96 = 0.96 0.99 0.99 = = = = = = = = = = = = = = = = = = = = = = = = = = 1 1 1 = = = = = = = 1 1 = = 0.99 1 1 = 1 1 = = = = = = = = = 1 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1 1 = = 1 1 1 = 1 1 1 = 1 = = 1 1 = = 1 = 1 1 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.71 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1 = = = = = = = 0.97 = = 0.51 = = = = = = = = 1 = = = = = = = = = = = = = = = = = = = = = 1 = = = = = = = = = = = = = 0.71 0.97 0.98 = 0.98 0.75 = 0.98 = 0.98 = 0.75 0.72 = = 0.74 = = 0.75 = = = = = = = = = = = = = = = = = = = = = = = 1 = = 0.52 = 1 = 1 = 0.99 0.99 = = = = = = = = = = = = = = = = = = = = = = 1 = = = = = = = = = 1 1 = = = = 0.76 = = = = = 0.74 = = = = = = = 1 0.77 = = = = 1 = = = 1 1 = = = = = = = = = = 0.99 = = = = = = = = = = = = = = 1 = = = = = = = = = = = = 1 = 0.58 = = = 1 = = = = = = = = = 1 1 = = = = = = = = = = = = = = = = = = = = = 0.64 = 0.58 = 0.57 = 0.58 = 0.57 0.56 = = = = = = = = = = = = = 1 = = 0.82 = 1 = 1 = 0.99 0.99 1 1 = 1 = = = 1 1 1 1 1 1 1 1 1 1 = = 1 1 1 1 = 1 1 1 = 1 = = = = = = = = = = = = = 1 = = = = = = = = = = = = = = = = = 1 = = = = = = = = = 1 1 = = = = = = 1 = = = = = = 1 1 = 1 = = 1 = = = = = 0.99 = 1 1 = 0.99 1 = 1 1 = = 1 1 1 1 = = = = = = 1 1 = = = = = = = = 0.97 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.85 = = = = = = = = = = = = = = = = = = 1 = = 1 1 = = = 1 1 = 0.98 0.98 = = 1 = = = = 1 0.99 = = = = 1 = = = = = = = = 1 = = 1 = = = 0.53 = 1 = 0.98 1 1 1 1 = 1 1 0.91 1 1 1 0.81 1 0.98 = = 1 = = 1 1 1 1 1 1 = 1 = 1 = = = 1 1 1 0.98 = 1 0.9 = 1 1 = 1 1 1 0.54 1 1 1 1 1 1 1 1 = = 1 = = = = 1 = = = = = = 0.85 = 0.74 0.55 = = = = = = 0.54 = = = = = = = = = = = = = 0.53 = = = 0.79 0.53 = = = = = 0.51 = 0.82 0.89 0.88 = = = 0.9 = = = = = = = = = = = = = = 0.65 = = = = = 0.8 = = = 1 = = = = 1 = 0.77 = = = = 0.99 = = = 1 1 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.8 = = = = = = = = = = = = = = = = 0.99 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1 1 = 1 = = 1 1 1 0.84 = 1 = 1 = = = = = = = = = = = 1 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.88 = = = = = = = = = = = = = = = = = = = = = 1 = 1 1 1 1 1 = 0.96 0.98 = = = = 1 1 0.98 = 0.93 = = = = 1 = = = = = = 1 1 1 = 1 = = = 1 = = = 0.98 1 = = 0.97 1 0.54 1 0.99 = 1 0.97 1 1 0.99 = 1 1 = = = = 1 = 0.77 = = = = 0.72 = 0.99 0.99 = = 0.73 0.78 = = 0.75 = = 0.73 1 = 1 = 1 = 1 = 1 1 = 1 1 1 = = 1 = = = = 1 = 1 0.55 = = = = = = 1 0.99 1 = = = = 1 = = = = = = = = = = = = = 1 = = = = 1 = = = = = 1 = 0.57 = = = = = 1 0.74 = = = = = 0.76 = = = = = = = = 0.69 = = = = = = = = 1 = 0.6 = 1 = = = = = 0.57 = = = = = = 1 1 1 1 1 1 1 = = = 1 = = = 1 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.59 = = = = = = = = = = = = 1 1 = = = 1 = 1 1 = = 1 1 1 = 1 1 = = 1 = 1 = = = 1 = 0.92 = 0.97 = 0.81 0.81 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.89 = = = 1 1 = = 1 1 0.99 = 1 = 1 1 0.97 1 1 1 1 = 0.59 = = = 0.56 = = = = = = = = 1 = = = = = = = 0.95 = = = = = = = = = = = 1 = 1 0.52 = 0.97 = 0.51 = = = = = 1 0.52 = 0.98 1 = 1 1 = 1 0.98 1 1 1 = = = = 0.98 = 0.99 1 = 0.57 0.94 0.96 = 0.96 0.51 0.55 = = = = 0.5 0.56 = = 0.52 = = 0.51 = 0.54 = = = = = = = = = = = = = = = = = = = = = 1 = = 0.76 = = = = 1 0.99 0.99 = = = = 1 = = = = = = = = = = = = = 1 = = = = 1 = = = = = 1 = 0.71 = = = = = 1 0.5 = = = = = 0.53 = = = = = = = 1 0.53 = = = = 1 = = = 1 = = = = 1 = 0.64 = = = = 0.99 = = = 1 1 = = = = = = = = = = = = = = = = 1 = = = = = = = = = = = = = = = = = = = = = = = 0.87 = = = = 0.99 = = = = = = = = = = = = = = = = = 1 = = 1 = = = = = = = = 1 1 = 1 = 0.79 1 1 1 0.74 = 1 = 1 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1 1 1 = 1 1 = 0.99 1 1 1 = = 1 1 0.99 0.99 0.99 0.99 1 1 = 0.89 = = = = 1 1 = 1 = 1 0.96 0.99 = = = = = = 1 = = = = = = 1 = = = = = 1 1 = 1 1 = 1 = = = = = = = 1 1 = = 1 = 1 1 = = 1 1 1 1 = = = = = 1 = 1 = 1 1 1 = 1 1 1 0.97 1 1 = 1 1 = 1 1 = 1 1 = = 0.9 = 0.88 = 0.89 = 0.89 0.89 = 1 1 1 = = 1 = = = = 1 = = = = = = = = = = = = 1 1 = 1 = 1 = 1 1 1 1 1 1 1 1 1 1 = = 1 1 1 = = 1 1 1 = 1 = = 1 = = = 1 1 = = 1 1 1 1 1 = 1 1 1 1 1 1 1 = = = = = = = = = = = = = 0.92 = = = = 0.51 0.52 = = = = = = = = 0.5 0.51 0.52 0.5 0.51 0.51 0.52 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.51 = = = = = = 0.92 = 0.91 0.92 0.89 = = 0.92 = 0.93 0.73 = 0.92 = 0.73 = = = = 0.55 = 0.56 0.92 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.92 = 0.91 = = = = = = = = = = = = = = = = = = = = 0.52 = = = = = 0.54 = = = 1 = = = 1 1 = 0.86 = = 0.71 = = = = = 1 1 = = = = = = 1 = 1 1 = = = 1 = = = 1 = 1 1 = 1 1 = 1 1 = = 1 1 1 1 = = = = 0.98 = 1 0.99 = 1 1 1 1 1 1 1 0.83 1 1 = 1 1 = = 1 = = 1 = 1 = = = = 1 = 1 1 = 0.66 1 1 1 1 1 1 = = 1 = 1 = = 1 1 1 0.97 = 0.99 = 0.91 0.91 = = = = = = = = = = = = = = = = = = = = = = 0.98 = = = = = = = = 0.95 = = = 1 1 = = 1 1 1 = 1 = 1 1 0.98 1 1 1 1 0.59 = = = = = = 1 = = = = = = = = = = = = = = = 1 1 = = = = = = = = = = = = 1 = = = = = = = = = = = = 1 = = = = 0.83 1 = = = = = = = = = 1 1 = = = = = = = = = = = = = = = 0.88 = = 0.83 = = 1 = = = = 0.69 = = = = = = = = = = = = = 0.91 = = = 0.91 = = 1 = 0.94 = 0.97 1 = = = = = = 0.99 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.92 = = = = = = = = = = = = = = = = 0.62 = = = = = = = 1 = 0.98 0.99 = = = 0.72 = = 0.52 = 0.99 = = = = 1 = = = = = = 1 = 1 = = 1 = = = = = 1 = 1 1 = = 1 = 1 1 0.52 0.51 1 1 1 1 0.51 = = = = = 1 0.59 = 1 1 1 = = = 1 0.99 1 1 = 1 1 = = = 0.51 = = = = = = 0.99 0.99 = = = = = = = = = = = = = = = = = 0.64 = = 0.52 = = = = = = = = = = = = 1 = = = = = = = = = = = = = = = = = = = = = = = = = 0.99 1 1 0.58 1 1 = 0.99 1 1 1 = = 0.99 1 = = = = 1 1 = 0.56 = = 0.53 = = =