List of haplotypes found in best reconstruction,
with frequencies in parentheses.

1: C C T C T I A (24)
2: T C T C T D C (22)


Summary of best reconstruction
(numbers refer to the list of haplotypes given above)

E001: (1,2)
E002: (2,2)
E003: (1,2)
E004: (2,2)
E005: (2,2)
E006: (1,2)
E007: (2,1)
E008: (1,2)
E009: (1,1)
E010: (2,2)
E011: (1,1)
E012: (1,2)
E013: (1,1)
E014: (2,2)
E015: (1,1)
E016: (1,2)
E017: (2,1)
E018: (1,2)
E019: (1,2)
E020: (1,2)
E021: (1,1)
E022: (2,1)
E023: (1,1)


Haplotype estimates for each individual, with uncertain phases enclosed in ()
and uncertain genotypes enclosed in []:

E001
C C T C T I A 
T C T C T D C 
E002
T C T C T D C 
T C T C T D C 
E003
C C T C T I A 
T C T C T D C 
E004
T C T C T D C 
T C T C T D C 
E005
T C T C T D C 
T C T C T D C 
E006
C C T C T I A 
T C T C T D C 
E007
T C T C T D C 
C C T C T I A 
E008
C C T C T I A 
T C T C T D C 
E009
C C T C T I A 
C C T C T I A 
E010
T C T C T D C 
T C T C T D C 
E011
C C T C T I A 
C C T C T I A 
E012
C C T C T I A 
T C T C T D C 
E013
C C T C T I A 
C C T C T I A 
E014
T C T C T D C 
T C T C T D C 
E015
C C T C T I A 
C C T C T I A 
E016
C C T C T I A 
T C T C T D C 
E017
T C T C T D C 
C C T C T I A 
E018
C C T C T I A 
T C T C T D C 
E019
C C T C T I A 
T C T C T D C 
E020
C C T C T I A 
T C T C T D C 
E021
C C T C T I A 
C C T C T I A 
E022
T C T C T D C 
C C T C T I A 
E023
C C T C T I A 
C C T C T I A 



Haplotype estimates for each individual, with uncertain phases enclosed in ()
and uncertain genotypes enclosed in []
with phase known positions indicated by =

E001
C = = = = I A 
T = = = = D C 
E002
= = = = = = = 
= = = = = = = 
E003
C = = = = I ? 
T = = = = D ? 
E004
= = = = = = = 
= = = = = = = 
E005
= = = = = = = 
= = = = = = = 
E006
C = = = = I A 
T = = = = D C 
E007
T = = = = D C 
C = = = = I A 
E008
C = = ? = I A 
T = = ? = D C 
E009
= = = = = = = 
= = = = = = = 
E010
= = = = = = = 
= = = = = = = 
E011
= = = = = = ? 
= = = = = = ? 
E012
C = = = = I A 
T = = = = D C 
E013
= = = = = = = 
= = = = = = = 
E014
= = = = = = = 
= = = = = = = 
E015
= = = = = = = 
= = = = = = = 
E016
C = = = = I A 
T = = = = D C 
E017
T = = = = D C 
C = = = = I A 
E018
C = = = = I A 
T = = = = D C 
E019
C = = = = I A 
T = = = = D C 
E020
C = = = = I A 
T = = = = D C 
E021
= = = = = = = 
= = = = = = = 
E022
T = = = = D C 
C = = = = I A 
E023
= = = = = = ? 
= = = = = = ? 



Phase probabilities at each site
with phase known positions indicated by =
1 = = = = 1 1 
= = = = = = = 
1 = = = = 1 = 
= = = = = = = 
= = = = = = = 
1 = = = = 1 1 
1 = = = = 1 1 
1 = = = = 1 1 
= = = = = = = 
= = = = = = = 
= = = = = = = 
1 = = = = 1 1 
= = = = = = = 
= = = = = = = 
= = = = = = = 
1 = = = = 1 1 
1 = = = = 1 1 
1 = = = = 1 1 
1 = = = = 1 1 
1 = = = = 1 1 
= = = = = = = 
1 = = = = 1 1 
= = = = = = =