APOC2 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
GGTTAGCGGT CAGGGGACAC ATAAGGGTAA AGGCAGGAGG CAAGAGGACT
50
GGCAGGGGGC TGCCCTGGGC CACCGGGAGC GACACAGGAT GAGCATGGAG
100
GGAAAGGGAG AAGGGGATTC TAGGGTCCCA GCCTACCCAA GTTGCCCTCT
150
GGTTCCACCT AGCATGCCAG CCAGAGGGCC CAGGAAGGAA CCC
C
GAG
C
CC
200 |
var(194):[T:0.41]
|
var(198):[T:0.01]
CCCACCAAAG CTAAAGATGA GTCGCTGGAG CCTGGTGAGG G
G
CAGGATGA
250 |
var(242):[A:0.01]
AGGAGCTGCT GGAGACAGTG GTGAACAGGA CCAGAGA
C
GG GTGGCAATGG
300 |
var(288):[T:0.01]
TTCTGGTGAG GGTGTGCTGG GCTGGGTGGT GGGAGG
G
G
A
C
T
C
C
T
G
G
G
T
C
T
350 |
REPEAT
G
A
G
G
G
A
G
G
A
G
G
G
G
C
T
G
G
G
G
C
C
T
G
G
A
C
C
C
C
T
G
A
G
T
C
T
C
A
G
G
G
A
G
G
A
G
G
A
A
A
400
G
G
G
T
G
G
G
A
G
T
G
G
G
G
C
T
G
T
G
A
C
C
C
C
T
A
G
G
T
C
T
G
G
G
A
G
G
A
G
T
G
G
AGGGTTAG
450
AGCTGAGAGC AGGAACTCCT AGGTCACAGA GAGGAGC
G
GA TAAATGGGGC
500 |
var(488):[A:0.01]
AGAGAACACC TGGGGAGAGC TGGGGCCTCC ACTGTGATGT CCTCTCTCCT
550
GTAGGAGCCC GAGCACCTTC CGGGGCTTCA TGCAGACCTA CTATGACGAC
600
CACCTGAGGG ACCTGGGTCC GC
T
CACCAAG GCCTGGTTCC TCGAATCCAA
650 |
var(623):[G:0.37]
AGACAGCCTC TTGAAGAAGA CCCACAGCCT GTGCCCCAGG CTTGTCTGTG
700
GGGACAAGGA CCAGGGTTAA AATGTTCATA AAA
G
C
C
A
G
G
T
G
T
G
G
T
T
G
T
G
G
750 |
REPEAT
C
G
G
G
T
G
C
C
T
G
T
A
G
T
C
C
C
A
G
C
T
A
C
T
C
A
G
G
A
G
G
C
T
G
A
G
G
T
A
G
G
A
T
G
A
T
G
G
C
T
800
T
G
A
G
C
C
C
A
G
G
A
G
T
T
C
G
A
G
A
C
C
A
G
C
C
T
G
G
G
C
A
A
C
A
C
A
G
C
G
A
G
A
T
C
T
C
T
T
G
G
850 |
var(850):[A:0.03]
G
G
G
T
A
A
A
A
C
A
A
A
A
A
G
A
A
A
A
A
A
AAAAGTTCA TACTTCTCCA ATAAATAAAG
900 |
var(853):[A:0.04]
TCTCACCTGT GTCCCTGTCT GGATCCTTCC CCAGTGTGGC CAGAAAAAAA
950
CCCACCCCAC TGCCTCCCAG GAATCAATGA GTAGAAGAGG TGACACCTGA
1000
TGGGGAAGGA AGAGTAGGGA GGTCGGGAAG GGTATCAAGG A
A
TAACACCC
1050 |
var(1042):[T:0.01]
TATTGTGGGC TTGCGGAGAA TGGGGGACTT CAAGGCGTGT CAGTTTCAGG
1100
AGGGTGAGGG CAGGAGCGTG GGTGGAGTCA GCAGGTCCCC ATGATGGCCC
1150
TCACTGAGAG CTTCGCCCTT GTCTCCTACA AGCTCTGACT CCATTCCCAG
1200
TGGGCACCCA GCACCTCCAA CCCCTCCACA GCCCCCAACC CAGCCTCTGT
1250
CGGAGGCGAA TTCTCAGAGT GAGGGTTCCC TGTCACTTGA GAGAAGGTTC
1300
CCTGTGACGT GACCTTGGGG GAC
G
TCATTG CCCTTTCTGT CCCCACCCAC
1350 |
var(1324):[A:0.01]
CCCCTC
G
GCA GTTCTGTTGG CCAGGACTTT GGCCTAGACA AAGGATGGGG
1400 |
var(1357):[C:0.46]
GTTGTGGCTG TGGAGCGGAA GTGGGTCTCA ACCACTATAA A
G
CCTCTCT
G
1450 |
var(1442):[T:0.46]
| Exon 1 |
UTR
T
G
C
C
C
G
T
C
C
G
G
A
G
C
T
G
G
T
G
A
G
G
A
C
A
G
C
C
T
G
C
C
A
G
A
G
T
C
T
G
GTAAGAAAGG
1500
GACTCAGGGT GCGGGGACAG GGGGGCGTCA GCAGGGAGAG GGCAAAGATC
1550
GATAAAGCAG GAATTTTAAG AGGCACAATA TTAGAAGCCC GTGTTGGAAC
1600
CATGACTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
1650
AGAGAGAGAG AGAGG
G
A
G
A
T
G
G
A
G
T
C
T
C
G
C
T
A
T
G
T
A
G
C
C
C
A
G
G
C
T
A
G
A
C
T
1700 |
REPEAT
C
A
A
A
C
T
C
C
T
G
G
G
C
T
C
A
A
G
C
A
A
T
C
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
C
C
A
G
T
A
G
C
T
G
1750
G
G
A
C
T
A
C
A
G
G
T
G
C
A
C
C
A
C
C
A
C
A
C
T
C
CACAA ATCACAGAAT TTAGAACTGT
1800
AGACTATTTG AGCTTCTGCT TAGAGTTA
G
G
G
T
G
G
C
T
G
A
G
G
T
G
G
G
G
A
G
G
A
T
1850 |
REPEAT
C
C
C
T
T
G
A
G
C
C
C
A
G
G
A
G
T
T
T
G
A
G
G
A
T
G
C
A
G
T
G
A
G
C
T
G
T
G
A
T
C
T
T
G
C
C
A
C
C
G
1900 |
var(1851):[T:0.01]
T
G
T
T
C
C
A
G
C
C
T
G
G
G
T
G
A
C
A
G
A
G
A
A
A
C
C
C
C
A
T
T
T
C
T
A
A
A
A
A
A
G
A
G
A
A
A
G
A
A
1950
A
A
A
GGGATA
G
G
T
A
C
A
A
T
G
G
C
T
C
A
T
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
A
C
T
C
T
G
G
G
A
G
G
2000 |
REPEAT
C
C
G
A
G
G
C
G
G
G
T
G
G
A
T
C
A
C
T
T
G
A
G
G
T
C
A
G
G
A
G
T
T
C
G
A
C
A
C
C
A
G
C
C
T
T
A
C
C
A
2050
G
C
A
T
G
G
T
G
A
A
A
C
C
G
C
A
T
C
T
A
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
T
T
G
G
C
C
G
G
G
T
G
T
G
2100 |
var(2090):[A:0.01]
G
T
A
G
C
A
T
A
T
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
T
A
T
T
C
C
A
G
A
G
G
C
T
G
A
G
A
C
A
G
G
A
G
A
A
T
2150
T
G
C
T
T
G
A
A
C
C
C
A
G
G
A
A
G
C
G
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
C
A
G
A
T
C
G
T
G
C
C
A
C
T
G
2200 |
var(2191):[T:0.46]
T
A
C
T
C
T
A
G
C
C
T
G
G
G
T
G
A
C
A
G
A
G
C
A
A
G
A
C
T
C
A
G
T
C
T
T
G
G
C
G
G
A
A
A
A
A
A
A
G
A
2250
A
T
G
A
A
A
A
A
A
T
T
T
A
A
A
A
A
A
C
T
A
A
A
A
A
A
GAAC TGTA
G
G
C
T
G
G
G
C
G
T
G
G
T
G
G
C
2300 |
REPEAT
T
T
A
C
A
C
T
T
G
T
A
A
T
C
C
A
A
A
C
G
C
T
T
T
G
G
G
A
G
G
C
C
A
A
G
G
C
A
A
A
C
G
G
A
T
C
A
C
T
T
2350
G
A
T
G
T
C
A
G
G
A
G
T
T
G
G
A
G
A
C
C
A
G
C
C
T
G
G
C
C
A
A
C
A
T
G
G
T
G
A
A
A
C
C
C
C
G
T
C
T
C
2400
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
T
T
A
G
A
C
A
G
G
C
A
T
G
G
T
G
G
T
G
C
A
T
G
C
T
T
G
T
A
T
T
T
C
2450 |
var(2410):[C:0.09]
C
A
G
T
T
A
C
T
C
A
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
G
A
A
T
C
G
C
T
C
G
A
A
C
C
C
G
G
A
A
G
A
C
A
G
2500 |
var(2486):[A:0.18]
A
G
G
T
T
G
C
G
G
T
G
A
G
C
C
A
A
A
A
T
T
G
C
G
C
C
A
T
C
G
C
A
C
T
C
C
A
G
C
C
T
G
G
G
C
G
A
G
A
G
2550
A
A
C
A
A
G
A
C
C
T
T
G
T
C
T
T
G
G
A
A
A
A
A
A
A
A
A
A
A
G
A
A
TTGTAGAC CATTTGCTTG
2600 |
var(2566):[C:0.49]
TGTTCTTTCT CCGGGGATCA GATCTCACCC TCTTTCTGCC GTACTTCCTC
2650
ATCTCCTACG TGTGGATGAT GATATTGTGC CCTGTGCATG TTCTTCGTCA
2700
CCAAAAGTGC CTCTCTCATA GAGCAGGTGA GAACTCAGTG AGGAGATGCA
2750
GGGACATGAG GTCTGACTTA GGGCAGAGCC CTAAGGTAAC ACATTTGATC
2800
TACTGTAGGT CCTTAATGGT GTCTGCAGAG CACCTCCCTG CACTGACTCA
2850
GCCTTAGCAA AGGGCAGAGG CTTTGCTGTG TTCCCTGCTG GGCCCAGAAC
2900
TGTTTAGGTG CTCAAGAAAG CCTTCTA
G
G
C
T
G
G
G
C
T
C
A
G
T
G
G
C
T
C
A
C
A
C
C
2950 |
REPEAT
|
var(2935):[G:0.07]
T
G
T
A
C
T
C
C
C
A
G
C
A
C
C
C
T
G
G
G
G
A
G
G
C
C
G
A
G
A
T
G
G
G
A
G
G
A
T
C
G
C
T
T
G
A
G
C
C
C
3000
A
G
G
A
G
T
T
C
C
A
G
A
C
C
A
G
C
C
T
G
G
G
C
A
A
C
A
A
A
A
C
A
A
G
T
C
T
C
C
C
A
T
C
T
C
T
A
C
A
A
3050 |
var(3010):[G:0.08]
|
var(3030):[G:0.48]
A
A
G
A
A
T
A
A
A
A
A
T
T
A
G
C
A
G
C
T
G
G
G
C
A
T
G
G
T
G
G
C
T
C
A
C
G
C
C
T
G
T
A
A
T
T
C
C
A
G
3100 |
REPEAT
|
var(3086):[T:0.44]
C
A
C
T
T
T
G
G
G
A
G
G
C
C
A
A
G
G
C
A
G
G
C
A
A
A
T
C
A
C
T
T
G
A
G
G
T
T
A
G
G
A
G
T
T
C
A
A
G
A
3150
C
C
A
G
C
C
T
G
G
C
C
A
A
C
A
T
G
G
T
G
A
A
A
C
C
C
C
A
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
T
3200
C
A
G
G
T
G
G
G
G
C
A
C
A
G
T
G
G
C
T
C
A
A
G
C
C
T
G
T
A
A
T
C
C
T
A
G
C
A
C
T
T
T
G
G
G
A
G
G
C
C
3250 |
REPEAT
A
A
G
G
T
G
G
G
C
G
G
A
T
C
A
C
G
A
G
G
T
C
A
G
A
A
G
T
T
C
G
A
G
A
C
C
A
G
C
C
T
G
G
C
C
A
G
C
A
T
3300 |
var(3259):[T:0.01]
|
var(3289):[G:0.01]
G
G
T
G
A
A
A
C
C
C
C
A
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
T
A
T
T
A
G
C
C
G
G
G
C
A
T
G
G
T
G
3350 |
var(3348):[A:0.08]
G
C
A
G
G
T
G
C
T
T
G
T
G
A
T
T
C
C
A
G
C
T
C
C
T
T
G
G
G
A
G
G
C
T
G
A
G
G
C
A
G
A
A
G
A
A
T
T
G
C
3400
T
A
G
A
A
C
C
C
T
G
G
A
G
G
C
A
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
G
A
G
A
A
C
A
C
G
C
C
A
C
T
G
C
A
C
3450
T
C
C
A
G
C
C
T
G
G
G
T
G
A
C
A
G
A
G
C
G
A
G
A
C
T
C
C
A
T
C
T
C
A
A
A
A
A
A
T
A
C
G
A
A
A
A
C
A
A
3500 |
var(3459):[C:0.01]
A
A
A
T
C
A
G
C
C
G
G
G
T
G
G
T
G
G
C
G
G
G
T
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
T
A
C
T
G
G
G
G
A
G
G
C
3550 |
REPEAT
T
G
A
G
G
C
A
G
G
A
G
A
A
T
T
G
C
T
T
G
A
A
C
C
T
G
G
G
A
G
G
T
G
G
G
G
G
T
T
G
C
A
G
T
G
A
G
C
C
A
3600 |
var(3600):[G:0.49]
A
G
A
T
T
G
C
A
C
C
A
C
T
G
C
A
C
T
C
C
A
G
C
C
T
G
G
G
C
A
A
C
A
G
A
G
T
G
A
G
A
T
T
C
C
A
T
C
T
C
3650
A
A
A
A
A
A
G
A
A
A
A
A
A
A
T
A
A
T
A
A
T
T
A
A
A
A
TGTT AAAATCAGGA G
T
AGAATCAC
3700 |
var(3692):[G:0.01]
AGAATGTTGG AAAGTGAGGC CCAAGAAGGG GGCTGTGTCC AAGTCCATGC
3750
ATGGGAAACT TGACTGGGAC ACCGAGC
A
CA CACAGAGCAG GATCTCAGTC
3800 |
var(3778):[T:0.44]
CCCCC
C
ACCA GAG
T
GGGGC
G
TGACCACAGG AACAGCCGCC TCCAGTCAGC
3850 |
var(3806):[G:0.02]
|
var(3814):[G:0.23]
|
var(3820):[A:0.03]
CTGCCACATG ACACCCCCTC AATGTTCCAG
G
T
C
T
C
T
G
G
A
C
A
C
T
A
T
G
G
G
C
A
3900 | Exon 2 |
UTR
M G 2
C
A
C
G
A
C
T
C
C
T
C
C
C
A
G
C
T
C
T
G
T
T
T
C
T
T
G
T
C
C
T
C
C
T
G
G
T
A
T
T
G
G
G
A
T
T
T
G
GT
3950
T R L L P A L F L V L L V L G F 18
GAGTGTGGGC TTCCGGGGAG GGAAGCCTTG GGGAGGGGAA TGAGCTCCAA
4000
GCATCTTCCC AGCCCAGGCC CTTCTTACCT CTGCCTCTGC CCTCTCCTCT
4050
TCTTCCTTCC TCCTTTCCCC CTGCTGCAGC CCCACGGGCT CTCCTGACAC
4100
ACTCTCCCCC TGCAG
A
G
G
T
C
C
A
G
G
G
G
A
C
C
C
A
A
C
A
G
C
C
C
C
A
G
C
A
A
G
A
T
G
A
G
4150 | Exon 3
E V Q G T Q Q P Q Q D E 30
A
T
G
C
C
T
A
G
C
C
C
G
A
C
C
T
T
C
C
T
C
A
C
C
C
A
G
G
T
G
A
A
G
G
A
A
T
C
T
C
T
C
T
C
C
A
G
T
T
A
4200
M P S P T F L T Q V K E S L S S Y 47
C
T
G
G
G
A
G
T
C
A
G
C
A
A
A
G
A
C
A
G
C
C
G
C
C
C
A
G
A
A
C
C
T
G
T
A
C
G
A
G
A
A
G
A
C
A
T
A
C
C
4250
W E S A K T A A Q N L Y E K T Y 63
T
G
C
C
C
G
C
T
G
T
A
G
A
T
G
A
G
A
A
A
C
T
C
A
G
GTAGC ACCTGCCCCT GGAGAAATGG
4300
L P A V D E K L R 72
GGTCTGGCCC ATACCACCGA CTGCATCCAG
G
A
C
C
C
A
G
A
A
G
T
T
C
A
G
G
C
C
C
C
4350 |
REPEAT
A
G
C
C
C
C
T
C
C
T
C
C
C
T
C
A
G
A
C
C
C
A
G
G
A
G
T
C
C
A
G
G
C
C
T
C
A
G
C
C
C
C
T
C
C
T
C
C
C
T
4400
C
A
G
A
C
C
C
A
G
G
A
G
T
C
C
A
G
G
C
C
C
C
C
A
G
C
C
C
G
T
C
C
T
C
C
C
T
C
A
G
A
C
C
C
A
G
G
A
G
T
4450
C
C
A
G
G
C
C
C
C
C
A
G
C
C
C
C
T
C
C
T
C
C
C
T
C
A
G
A
C
C
C
A
G
G
A
G
T
C
C
A
G
G
T
C
C
C
C
A
G
A
4500 |
var(4493):[T:0.49]
C
C
C
T
C
C
T
C
C
C
T
C
A
G
A
C
C
C
A
G
G
A
G
T
C
C
A
G
G
C
C
C
C
C
A
G
C
C
C
C
T
C
C
T
C
C
C
T
C
T
4550
A
A
C
C
ATCTGT GCTTTCTCCC CAG
G
G
A
C
T
T
G
T
A
C
A
G
C
A
A
A
A
G
C
A
C
A
G
C
A
G
C
4600 | Exon 4
D L Y S K S T A A 81
C
A
T
G
A
G
C
A
C
T
T
A
C
A
C
A
G
G
C
A
T
T
T
T
T
A
C
T
G
A
C
C
A
A
G
T
T
C
T
T
T
C
T
G
T
G
C
T
G
A
4650
M S T Y T G I F T D Q V L S V L 97
A
G
G
G
A
G
A
G
G
A
G
T
A
A
C
A
G
C
C
A
G
A
C
C
C
C
C
C
A
T
C
A
G
T
G
G
A
C
A
A
G
G
G
G
A
G
A
G
T
C
4700 |
UTR
K G E E 101
C
C
C
T
A
C
T
C
C
C
C
T
G
A
T
C
C
C
C
C
A
G
G
T
T
C
A
G
A
C
T
G
A
G
C
T
C
C
C
C
C
T
T
C
C
C
A
G
T
A
4750
G
C
T
C
T
T
G
C
A
T
C
C
T
C
C
T
C
C
C
A
A
C
T
C
T
A
G
C
C
T
G
A
A
T
T
C
T
T
T
T
C
A
A
T
A
A
A
A
A
A
4800
T
A
C
A
A
T
T
CAA GTTGCTTCTC ATGGATGGCA CTGCTTTTCT GAGGACTCAA
4850
GGTGCCAAGA TGGAGGGGCT G
A
C
T
C
A
G
T
C
C
A
G
C
C
A
A
C
A
T
T
T
A
A
T
G
A
G
C
A
C
4900 |
REPEAT
C
T
A
C
T
T
T
A
T
G
T
A
T
G
G
A
G
C
T
C
T
A
A
C
C
C
A
T
G
G
G
T
C
C
A
T
G
G
G
A
A
T
A
A
A
G
C
A
G
T
4950
G
A
A
T
A
G
T
A
A
C
A
A
T
A
A
A
TAAT
C
GTAACAGCA ATTAGAGACT AATCTTTATT
5000 |
var(4971):[T:0.35]
GAA
G
TCCGGC
T
T
T
C
T
C
T
C
T
T
T
T
A
T
T
T
T
T
T
T
A
T
T
T
T
T
T
G
A
G
A
C
A
G
G
G
T
T
T
C
5050 |
var(5004):[A:0.10]
|
REPEAT
A
C
T
C
T
G
T
C
A
C
C
C
A
G
G
C
T
G
G
A
C
A
G
C
A
G
T
G
G
T
G
C
A
A
T
C
T
C
G
G
C
T
C
A
C
T
G
C
A
C
5100
C
C
T
C
C
G
C
C
T
C
C
C
A
G
G
T
T
C
C
A
G
C
G
A
T
T
C
T
G
T
G
T
G
C
C
T
C
A
G
C
C
T
C
T
G
G
A
G
T
A
5150
G
C
T
G
G
G
A
T
T
A
T
G
G
G
C
A
T
G
T
G
C
C
A
C
T
G
T
G
C
A
C
G
G
C
T
A
A
T
G
T
T
T
G
T
A
T
T
T
T
T
5200
A
G
T
A
G
G
G
T
T
T
T
G
C
C
A
G
T
T
G
G
C
T
A
G
G
C
T
G
G
T
C
T
C
A
A
A
C
T
T
C
T
G
A
C
C
T
C
A
A
G
5250
T
G
A
T
C
C
A
C
C
C
G
C
C
T
C
A
G
C
C
T
C
C
C
A
A
A
G
T
A
C
T
G
G
G
G
T
G
A
C
A
G
G
C
A
T
G
A
G
C
C
5300
A
C
C
G
C