PPARA Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
G
A
C
A
C
A
C
A
C
C
G
A
G
G
A
C
T
C
T
T
G
C
G
A
G
G
G
A
T
C
T
C
G
G
G
G
C
C
C
A
G
C
T
C
G
G
C
C
T
C
50 |
NOT SCANNED
C
C
T
C
C
T
A
G
C
G
C
T
G
G
G
G
G
C
C
T
G
C
C
C
G
G
A
A
C
C
C
G
A
G
T
C
C
G
C
G
G
C
T
G
T
C
C
C
T
G
100
G
G
G
TTTGGCG CTGCGCGGAG GTCGGGTCTG GGGACCGCAG CGACTCTGGG
150
TCTTCGGGTT GTCCCCTCGG AGGGAGGGCC CACGGGCGGG GACATCGGGA
200
CTTGCCCTTT CCTCGGCGCA GCGGAGCTGG GGCGTCGCCG ACTCAGAAG
G
250 |
NOT SCANNED
T
G
C
T
T
T
C
C
G
A
G
A
C
C
T
C
C
A
G
G
G
A
T
C
T
C
C
G
A
G
G
C
G
A
G
G
A
A
A
C
C
C
G
G
G
C
C
C
C
G
300
G
A
C
A
G
A
C
C
G
A
C
C
C
T
G
G
G
T
G
G
G
T
G
C
G
C
C
C
G
G
C
T
T
C
T
G
C
C
G
T
C
G
G
A
C
G
G
A
G
A
350
C
G
C
G
C
G
T
G
T
T
T
G
T
T
C
C
T
C
C
A
G
C
T
G
C
G
A
C
C
A
C
C
T
T
T
G
A
G
G
A
A
C
G
G
T
T
C
C
C
A
400
CTTTGTGCCC CAACGCGGCG GGGCGACCCC GGACAGGCTG CGCTGGGCCG
450
GGTGGCTTCT CTGCGGAAGC CGCGCCACGT CGCTCCCGGT CGGGGCCGCT
500
GAGGGTCGGG CGCCCAGGTC TTTCCGGAGT CCCGGGCTGC GCGGCCCGCG
550
TGGTGCGGGT GAAGCTGGAG GGGCGCGGGG TGGTGCCAGT GGAAGTCAGG
600
AGGGTCGGCC CTGC
C
CCCTC ACGCACCCCA ACCGGGCACA ACTGCACGCC
650 |
var(615):[T:0.01]
TGTGCTTTTC TGAAGTCTTT TTTAAAAGTT AAAAGAGAGG AAGTGTGCTC
700
CAAGTGTCAG GATTCTTTCC AAGAAAAACC CACAGTTGTC CAATGGCCTG
750
GGCTTCGTGG GACCTCCGGG GCTGCACGCC CACGTCAGCC TCAGCCGACC
800
CCTGCCAGGA AACCAGGGAG GCCCCTCCTC TCCCAGCCTC CTTGGGATAA
850
GGGTGCCTTG GGGAACTGGG TCAGGGCAAG GACACGGGAT TTTCCTGGGA
900
AGGACCCTGC GACACCCGTG TCGTTGCGGG GCAGGGTCAG CATGACTTTC
950
CTCTTCCAAG GTGAAGAGTT GGGGGGCATC CAGAGAACAA CCGTAATCAC
1000
TTCCTCCTTC ACCTTCTTAC TG
C
C
A
G
G
C
T
G
A
A
G
C
T
C
A
G
G
G
C
C
C
T
G
T
C
T
G
C
1050 | Exon 1 |
UTR
T
C
T
G
T
G
G
A
C
T
C
A
A
C
A
G
T
T
T
G
T
G
G
C
A
A
G
A
C
A
A
G
C
T
C
A
G
A
A
C
T
G
A
G
A
A
G
C
T
G
1100
T
C
A
C
C
A
C
A
G
G TAAATAGAAG GTTTAATTTA CTGTTTCCAG ATGGAAATAT
1150
TTAAGTGTTT TCAGTGTTTA CTTCTGTTGC ACTACAGACC AGCAATCTGG
1200
GGGTTATTAC TTTGTGATGC AAGGTTAGAT ACGTTTTCAG ACTGAAAGTA
1250
AAATACATGT GCATGGATTC A
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
A
G
A
1300 |
REPEAT
C
G
G
A
G
T
C
T
C
G
C
T
C
T
G
C
C
G
C
C
C
A
G
G
C
T
G
G
A
G
T
G
C
A
G
T
G
G
C
C
T
A
A
T
C
T
C
A
G
A
1350
T
C
A
C
A
G
C
A
A
C
C
T
C
T
G
C
C
A
C
T
G
G
G
G
T
T
C
A
A
G
C
G
A
T
T
C
T
C
T
T
G
C
C
T
C
A
G
C
C
T
1400
C
C
C
G
A
G
T
A
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
G
C
C
T
G
C
C
A
C
C
A
T
G
C
C
C
A
G
C
T
A
A
T
T
T
T
T
1450
G
T
A
G
T
T
T
T
A
G
T
A
G
A
G
G
C
G
G
G
G
T
T
T
C
A
C
C
A
T
C
T
T
G
G
C
C
A
G
G
C
T
G
A
T
C
T
T
G
A
1500
A
C
T
C
C
T
G
A
C
C
T
C
A
T
G
A
T
C
C
A
C
C
T
G
T
T
C
C
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
T
A
C
A
G
1550
A
C
G
T
G
A
G
C
C
A
C
C
G
T
G
C
C
T
G
G
C
C
TAGGATTC ACTTTGAAGT TCTGAGTTAT
1600 |
var(1563):[A:0.01]
TGTGTGACTT TTGCTAGGAA CTTCATTGCT TCGTGGCAGG CATGTTTTGT
1650
ATAATTTAAA ACTTGATGAC ATTAACTTTG AGAAACGTGA GTGCTTACTA
1700
GACCCTTGGG ATGTCCACAC TGACTGGTAC CGAGTAGTGT ACTGTCTCTG
1750
AGCTGTTTTC ATTTTGATTT GAATATTAAG CAGATGGCTT CTTGAGATAG
1800
ACCCGTGCCA GAACATGCCA GGGATAGGCT GAAGAA
A
CGG GCCAGATGAT
1850 |
var(1837):[G:0.05]
ACAAATTTGT GTGGTCACCA TCCATGAGAG ACCAGGGACA CTGGGGCTGA
1900
TGATGACCTC TGCAACTCTG AAGCAAAAGT AAACTAATTG GCAAGTT
G
G
G
1950 |
REPEAT
T
G
C
G
G
T
G
G
C
T
C
A
C
T
C
C
T
G
T
A
A
T
C
C
C
A
G
C
A
C
T
T
T
G
G
A
A
G
C
T
G
G
G
G
T
G
G
G
C
A
2000 |
var(1954):[A:0.02]
|
var(1955):[A:0.01]
G
A
T
C
G
C
T
T
G
A
G
G
C
C
A
G
G
A
G
T
T
C
G
A
G
A
C
C
A
G
C
C
T
G
G
C
C
A
A
C
A
T
G
G
T
G
A
A
A
C
2050 |
var(2027):[T:0.04]
C
T
T
G
T
C
T
C
T
A
C
A
A
A
A
A
A
A
T
A
G
A
A
A
T
A
T
T
G
C
C
T
G
G
G
C
A
T
G
G
T
G
G
C
G
G
A
C
A
T
2100 |
var(2100):[C:0.03]
C
T
G
T
A
A
T
C
C
C
A
G
C
T
A
C
T
C
A
A
G
A
A
A
C
T
G
A
G
G
C
A
G
G
A
G
A
A
T
C
G
C
T
T
G
A
G
C
C
T
2150
G
G
G
A
G
G
T
G
A
A
G
G
T
T
T
T
A
G
T
G
A
A
C
T
G
A
G
A
T
T
G
T
G
C
C
A
C
T
G
C
A
C
T
G
C
A
G
C
C
T
2200
G
G
G
C
G
C
C
A
G
G
G
C
G
A
G
A
C
T
C
C
G
T
C
T
C
A
A
A
A
A
T
A
A
A
T
A
A
A
T
A
A
A
A
T
A
A
A
A
TT
2250
AATTAACTAA TTGACATTAG AAAAAAATGT TTTTTCTTTC TTTTCCCACA
2300
TCC
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
T
G
A
C
A
G
A
G
T
T
T
T
G
C
T
C
T
T
G
T
C
A
C
2350 |
REPEAT
C
C
A
G
G
C
T
G
G
A
G
T
G
C
A
G
T
G
G
C
A
T
G
A
T
C
T
T
G
G
C
T
C
A
C
C
G
C
A
A
C
G
T
C
C
A
C
C
T
C
2400
A
C
G
G
A
T
T
C
G
A
A
C
A
A
T
A
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
C
G
A
G
T
A
G
C
T
G
G
G
A
T
T
A
C
2450
A
G
G
C
A
C
T
C
A
C
C
A
C
C
A
C
A
C
C
C
G
G
C
T
A
A
T
T
T
T
T
G
T
A
T
T
T
T
T
A
G
T
A
G
A
G
G
T
G
G
2500
G
T
T
T
C
A
C
C
A
T
G
T
T
G
G
C
T
G
G
G
C
T
G
G
T
C
T
C
A
A
A
C
T
C
C
T
G
A
C
C
T
C
A
G
G
T
G
A
A
C
2550
C
G
C
C
T
G
C
C
T
T
G
G
C
C
T
C
C
C
A
A
A
G
G
G
C
T
G
A
G
G
T
T
A
C
A
G
G
T
G
C
G
A
G
C
C
A
C
C
G
C
2600 |
var(2591):[A:0.02]
G
C
C
G
G
G
C
C
CT TTTCCGACAT CTTAAAC
G
TA AAGTAGGAGA CGTGTCATAA
2650 |
var(2628):[C:0.05]
TCATCGAATA CTGCAGTGGT TTTCATTAGC TCCTGTTTGT CAAACTTATG
2700
AACAGAGTTT TAAAAATTGT GTATC
A
G
C
C
G
G
G
T
G
C
G
G
T
G
G
C
T
C
A
C
A
C
C
T
G
2750 |
REPEAT
T
A
A
T
C
T
T
T
G
G
G
A
G
G
C
T
G
A
G
G
T
G
G
G
C
A
G
A
T
G
A
C
A
A
G
A
T
C
A
G
G
A
G
T
T
T
G
A
G
A
2800
C
C
A
G
C
C
T
G
G
C
C
A
A
T
A
T
G
G
T
G
A
A
A
C
C
C
T
G
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
T
2850 |
NOT SCANNED
T
A
G
C
T
G
G
G
C
A
T
G
G
T
G
G
C
G
G
G
T
G
C
C
T
A
T
G
G
T
C
C
C
A
G
C
T
A
C
T
C
A
G
G
A
G
G
C
T
G
2900
A
A
G
C
A
G
G
A
G
A
A
T
C
T
C
T
T
G
A
A
C
C
C
G
G
G
A
G
G
T
G
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
T
G
A
G
2950
A
T
G
G
C
A
C
C
A
C
A
G
C
A
C
C
C
C
A
G
C
C
T
G
G
G
T
G
A
C
A
G
A
G
C
A
A
G
A
C
T
C
C
G
T
T
T
C
C
A
3000
A
A
A
A
A
A
A
A
A
A
A
TTGTATATG AGAGAGACAG AACTAGACAG AGAAGAAGGA
3050
GAAAATGTGT CTTCTTTATA CACTATTTTG TAACTTGCTT TATCGAGTAG
3100
GTTATGAAAA ATCTTCCTAT GTGAAAAACA TTTCTGCATC ATTTGAAATG
3150
TCTATATAAT ATCCCATTGT GTTTAGATAC AATAATATTT AGCCAATCTC
3200
TTTATGTGTA TATATTTA
A
T
A
C
A
G
T
C
A
T
T
C
T
A
T
A
A
A
T
A
T
T
G
A
C
T
G
A
G
T
A
G
3250 |
REPEAT
C
T
G
C
T
G
T
G
G
G
C
T
A
C
T
G
T
C
C
G
C
A
G
T
G
C
T
G
A
A
C
A
A
G
A
C
A
A
G
C
A
T
G
A
A
T
C
C
A
T
3300
G
AAACTGATT TTCATACCAG AATATAAAAA AGAAACTTAA AG
A
TAATCCT
3350 |
var(3343):[G:0.06]
CATCATGGTA AAAGATGAAG AACCTATTTT TGCCGGGACA TCTTACTCTT
3400
TAGTAATTGG TGGCCAGTGT TCTTTTTCTT GCATGCTGTT TTGGAGAGTC
3450
TGTTTTTTAA ATAAATATTT AAGTAGC
C
T
G
G
G
C
G
C
A
G
T
G
G
C
T
C
A
C
G
C
C
T
A
3500 |
REPEAT
T
G
G
T
T
T
C
A
G
C
A
C
T
T
T
G
T
G
A
G
G
C
C
G
A
A
G
G
G
G
A
T
G
G
A
T
T
G
C
T
T
G
A
G
C
C
C
A
G
G
3550
G
G
T
T
C
A
A
G
A
C
C
A
G
C
C
T
G
G
G
C
A
A
C
C
T
G
G
C
G
A
A
A
C
C
C
T
G
C
A
T
C
T
A
C
T
A
A
A
A
A
3600 |
var(3552):[C:0.31]
T
A
C
A
A
A
A
A
T
T
A
G
C
C
A
G
G
T
A
T
A
G
T
G
G
C
G
T
G
T
G
C
C
T
G
T
G
G
C
C
C
C
A
T
C
T
A
C
T
T
3650
G
G
G
A
G
G
C
T
G
A
G
G
T
G
G
G
A
G
G
A
T
C
C
C
T
T
G
A
G
C
C
T
G
A
G
A
A
G
T
G
G
A
G
G
T
T
G
C
A
G
3700
T
G
A
C
T
G
A
G
A
T
G
G
C
A
C
C
A
C
T
A
C
A
C
T
C
C
A
G
C
C
T
G
G
G
T
G
A
C
A
G
A
G
T
G
A
G
A
C
C
T
3750
G
G
T
C
T
C
A
A
A
A
A
A
T
A
A
A
T
A
A
A
TATTTATGTA ATCATCTTTA AGCAGTGTTT
3800
TTAAT
T
T
T
A
T
T
T
A
T
T
T
A
T
T
T
A
T
T
T
A
T
T
T
T
T
G
A
G
A
C
A
G
G
G
T
C
T
C
A
C
T
G
T
G
T
3850 |
REPEAT
C
A
C
C
T
A
G
G
C
T
A
G
A
G
C
A
C
A
G
C
T
G
C
A
T
G
A
T
C
A
C
G
G
C
C
T
A
T
T
G
C
A
G
C
C
T
C
G
A
C
3900
C
T
C
C
C
T
G
G
G
C
T
C
A
G
G
T
G
A
T
C
C
T
C
C
C
A
C
C
T
C
A
G
C
C
T
C
C
C
A
A
G
C
A
G
C
T
A
G
G
A
3950
C
C
A
C
A
G
G
C
A
C
A
C
G
C
C
A
C
C
A
G
G
C
C
T
G
A
C
T
C
A
T
T
T
T
T
G
T
A
T
T
T
T
T
T
G
C
A
G
A
G
4000
A
C
G
G
G
G
T
C
T
T
G
C
T
A
T
G
T
T
G
T
T
C
A
G
A
C
C
T
G
T
C
T
C
A
A
A
C
T
C
C
T
G
G
G
C
T
C
A
A
G
4050
C
C
A
T
C
C
T
C
C
T
G
C
C
T
C
G
G
C
C
T
C
C
C
A
T
A
G
T
G
C
T
G
G
G
A
C
T
A
A
G
C
C
A
T
G
A
A
C
C
A
4100
C
T
G
C
A
C
C
C
G
G
C
ATAAGTGGT CTTTCTTTAA AAAAAAAAAA AAAAAAAAAA
4150
AAAAAAAAAC CACATTAATT AAAATATGTA TTTGCTTATT ATAAA
T
ATAT
4200 |
var(4196):[C:0.01]
TTGAAACATG CCAATTTTTC TTCTCTTTTT TTGCTCTATT GGTTTCTGTG
4250
TGTGGATGGA TATATTTTTA ATGGCAAATA GGATGAGTGT CTTTACTTCC
4300
AAGTAGTCAG TGTTTTTCTT TAATGTTTGT ACTAATTTTG TCACATTGCA
4350
GTTAGAGGTT GTGGC
C
T
G
T
C TAATTTCTGC TTTTTTGGAA CTTGAGAGTC
4400 |
var(4366):[-:0.01]
TCTGTTTTTA TTTGT
T
TTTG GTAGCCTGGC ATAGAGT
C
CA
T
T
T
T
T
C
T
T
T
T
4450 |
var(4416):[A:0.01]
|
var(4438):[G:0.01]
|
REPEAT
C
T
T
T
T
C
T
T
T
T
T
T
T
G
A
G
A
C
G
G
A
G
T
T
T
A
G
C
T
C
T
T
G
T
T
G
C
C
C
A
G
A
C
T
G
G
C
G
T
G
4500
C
A
G
T
G
G
C
G
C
A
A
T
C
T
C
A
G
C
T
C
A
C
T
G
C
A
A
C
C
T
C
C
G
C
C
T
C
C
T
G
G
G
T
T
C
A
A
G
C
G
4550 |
var(4508):[A:0.01]
A
T
T
C
T
C
C
T
G
C
C
T
C
A
G
T
C
T
C
C
C
C
A
G
T
A
G
C
T
G
G
G
A
T
T
A
C
A
G
G
T
G
C
C
C
A
C
C
A
C
4600
C
A
C
A
C
C
T
G
G
C
T
A
T
T
T
T
T
T
G
T
A
T
T
T
T
T
A
G
T
A
G
A
G
A
C
G
G
G
G
T
T
T
T
G
C
C
A
T
G
T
4650 |
var(4644):[A:0.04]
T
G
G
C
C
A
G
G
C
T
G
G
T
C
T
C
G
A
A
C
T
C
C
T
G
A
T
C
T
C
A
G
G
T
G
A
T
C
C
A
C
C
C
G
C
C
T
C
G
G
4700
C
C
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
T
G
T
G
A
G
C
C
A
C
T
G
C
G
C
C
C
A
G
C
T
GTAG
4750
ATACTTTTTA AAAAGGTATA GTTTCTGATT ATGGGGTAGA AATGTGCTAT
4800
GTCTGTCATT TCAGCCTTAT GAATTGCCCA GAATAAGCTA GATCACCTTT
4850
AAGGCCATGT GGTTAGGGAA ACTTGGGCAC AGAATTTACA TTTTCAACTT
4900
GGTGATAAGA TGGGTTTAAG GTAAGAATCA AATAGGAGAA AGCCTTAGCT
4950
GTTCCAGCGG CCCATGTTTA AAAGAATGTG CTTCTTTTTC CAAGTATTTC
5000
TGCCGCTTGC ATGCACTGAG CTTCTTTGGA AAGGAGCACC ATGCAGGCAT
5050
ATTTTCCAGA CAGGACCGGA TTTGCTCGTT ACTCAGAGGT GTGTGCATTC
5100
TTTGCTTTTA GGATATTTAA TTAGCATCTT TTAATAGTGA TATTACGGTG
5150
TCTTAAAAGT TTATGCATTT GAAAAGAAAA GAACTTACTC CTTGCCAGGT
5200
CTCAACCTAT CATGGTTATC TTTGCAGCTG AGCTGCGTTG GTTTTGAGGC
5250
TCAC
A
TATGG TAAAAGTGGT TGGAAATCTG GAAATATTGC TGTGTATCTG
5300 |
var(5255):[G:0.01]
CAAAGCAGCT TGATATAGTG GAAAAGGTAT TAGGTCATT
A
A
T
C
A
T
G
A
G
A
T
5350 |
REPEAT
T
T
G
G
A
T
T
C
T
A
G
C
C
C
C
T
T
A
G
C
T
G
C
T
G
C
C
T
G
C
C
A
G
G
C
C
T
G
G
A
G
A
C
C
T
T
T
G
T
T
5400
C
T
C
T
T
C
T
T
T
A
A
A
C
T
G
C
T
G
C
T
T
T
C
T
C
A
T
C
A
G
A
A
A
A
T
G
A
A
G
T
T
C
C
T
C
T
C
C
A
T
5450 |
NOT SCANNED
A
C
C
A
C
C
T
C
T
C
T
G
A
A
G
G
G
C
T
G
T
G
A
A
G
C
T
C
G
A
A
G
T
G
G
C
A
G
C
T
T
A
A
A
A
A
A
C
T
G
5500
C
C
C
A
T
C
T
C
A
G
G
A
G
G
T
G
T
C
T
T
A
A
G
A
A
G
G
A
G
G
A
C
A
T
A
C
C
G
C
T
G
G
C
T
C
C
T
G
C
C
5550
T
T
T
C
T
C
A
C
T
T
A
G
C
C
A
G
G
T
C
T
G
A
T
A
C
C
T
G
T
G
T
T
G
T
T
T
T
C
A
C
T
G
T
G
G
C
C
A
T
T
5600
T
T
A
G
G
A
T
T
T
T
T
C
A
A
A
G
G
C
T
T
T
C
A
G
A
A
A
G
C
A
A
C
A
T
G
C
T
A
C
C
G
T
A
C
C
C
C
T
T
A
5650
T
A
C
A
C
C
A
A
A
A
C
T
G
G
T
T
T
T
C
A
T
T
T
T
G
G
A
A
T
A
T
A
A
A
A
G
T
G
A
G
A
T
T
T
C
T
C
C
A
C
5700
C
A
G
T
A
C
A
A
T
A
A
A
G
T
T
G
T
T
A
C
A
A
G
T
G
G
T
T
C
C
T
A
T
G
T
G
T
T
T
G
T
T
T
T
T
G
T
T
T
T
5750 |
REPEAT
T
G
A
G
A
C
A
G
A
G
T
C
T
C
A
C
T
C
T
G
T
C
A
C
C
C
A
G
G
C
T
G
C
A
G
T
G
C
A
G
T
G
G
C
A
C
A
A
T
C
5800
T
T
G
G
C