LOCUS APOC3 4745 bp DNA linear PRI 19-SEP-2003 DEFINITION Homo sapiens. ACCESSION APOC3 VERSION APOC3 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4745) AUTHORS Nickerson,D.A., Smith,J.D., Fullerton,S.M., Clark,A.G., Stengard,J.H., Salomaa,V., Boerwinkle,E., Sing,C.F. and Weiss,K.M. TITLE Direct Submission JOURNAL Submitted (02-APR-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA FEATURES Location/Qualifiers source 1..4745 /organism="Homo sapiens" /db_xref="taxon:9606" variation 115 /frequency="0.02" /replace="T" variation 168 /frequency="0.02" /replace="A" variation 174 /frequency="0.05" /replace="A" repeat_region 179..347 /rpt_family="MIR" /rpt_type=dispersed variation 224 /frequency="0.46" /replace="C" variation 427 /frequency="0.04" /replace="T" variation 459 /frequency="0.01" /replace="T" variation 460 /frequency="0.09" /replace="A" variation 573 /frequency="0.01" /replace="T" variation 763 /frequency="0.44" /replace="C" variation 774 /frequency="0.44" /replace="G" variation 778 /frequency="0.56" /replace="" variation 921 /frequency="0.49" /replace="T" variation 948 /frequency="0.45" /replace="T" variation 973 /frequency="0.04" /replace="C" variation 1267 /frequency="0.01" /replace="A" variation 1395 /frequency="0.02" /replace="G" gene 1403..4560 /gene="APOC3" mRNA join(1403..1435,2065..2132,2268..2391,4253..4560) /gene="APOC3" /product="APOC3" repeat_region 1534..1668 /rpt_family="MIR" /rpt_type=dispersed variation 1554 /gene="APOC3" /frequency="0.04" /replace="T" variation 1556 /gene="APOC3" /frequency="0.26" /replace="C" variation 1564 /gene="APOC3" /frequency="0.10" /replace="T" variation 1639 /gene="APOC3" /frequency="0.20" /replace="C" repeat_region 1695..1862 /rpt_family="MIR" /rpt_type=dispersed variation 1901 /gene="APOC3" /frequency="0.49" /replace="C" variation 1932 /gene="APOC3" /frequency="0.40" /replace="G" variation 1995 /gene="APOC3" /frequency="0.07" /replace="A" variation 2003 /gene="APOC3" /frequency="0.03" /replace="T" CDS join(2078..2132,2268..2391,4253..4373) /gene="APOC3" /codon_start=1 /product="apolipoprotein C-III" /translation="MQPRVLLVVALLALLASARASEAEDASLLSFMQGYMKHATKTAK DALSSVQESQVAQQARGWVTDGFSSLKDYWSTVKDKFSEFWDLDPEVRPTSAVAA" variation 2195 /gene="APOC3" /frequency="0.01" /replace="G" variation 2314 /gene="APOC3" /frequency="0.32" /replace="T" variation 2448 /gene="APOC3" /frequency="0.24" /replace="A" variation 2453 /gene="APOC3" /frequency="0.15" /replace="A" variation 2612 /gene="APOC3" /frequency="0.22" /replace="A" variation 2629 /gene="APOC3" /frequency="0.14" /replace="T" repeat_region 2669..3153 /rpt_family="Alu" /rpt_type=dispersed variation 2677 /gene="APOC3" /frequency="0.19" /replace="C" variation 2896 /gene="APOC3" /frequency="0.09" /replace="T" variation 2940 /gene="APOC3" /frequency="0.01" /replace="A" variation 3002 /gene="APOC3" /frequency="0.02" /replace="T" variation 3118 /gene="APOC3" /frequency="0.24" /replace="C" variation 3126 /gene="APOC3" /frequency="0.01" /replace="C" variation 3135 /gene="APOC3" /frequency="0.37" /replace="T" repeat_region 3185..3515 /rpt_family="MER1_type" /rpt_type=dispersed variation 3352 /gene="APOC3" /frequency="0.24" /replace="C" variation 3551 /gene="APOC3" /frequency="0.19" /replace="T" repeat_region 3719..3839 /rpt_family="MIR" /rpt_type=dispersed variation 3720 /gene="APOC3" /frequency="0.01" /replace="C" variation 3753 /gene="APOC3" /frequency="0.01" /replace="" variation 3919 /gene="APOC3" /frequency="0.37" /replace="C" variation 4171 /gene="APOC3" /frequency="0.04" /replace="A" variation 4413 /gene="APOC3" /frequency="0.13" /replace="G" variation 4444 /gene="APOC3" /frequency="0.40" /replace="T" variation 4669 /frequency="0.01" /replace="T" repeat_region 4699..4736 /rpt_family="MIR" /rpt_type=dispersed BASE COUNT 849 a 1462 c 1271 g 1163 t ORIGIN 1 ggccactttc tcaggcctct gatttcatac tgtggtgtta gttacttctg agaggacagc 61 ttgctgccag agctctattt tttatgttag aggctccttc tgcctgcaga ctctgctgtc 121 tgggaagggc acagcgttag gagggagagg gaggtgtgag tccctccgtg gacccgctgc 181 tttgtacttc tctatctcat ttccttttca gcaccactct gggaaatcag tattccagcc 241 ccattttatc ctcagaaaat tgaggctctg agatgttatc tctgtgacct gggtcctatt 301 acgtgccaaa ggcatcattt aagcctaaga tgtcctggct ccaaggtgtc agcatctgga 361 agacaggcgc cctcatcctg ccatccctgc tgcggcttca ctgtgggccc aggggacatc 421 tcagccccga gaagggtcag cggcccctcc tggaccaccg actccccgca gaactcctct 481 gtgccctctc ctcaccagac cttgttcctc ccagttgctc ccacagccag ggggcagtga 541 gggctgctct tcccccagcc ccactgagga acccaggaag gtgaacgaga gaatcagtcc 601 tggtgggggc tggggagggc cccagacatg agaccagctc ctcccccagg ggatgttatc 661 agtgggtcca gagggcaaaa tagggagcct ggtggaggga ggggcaaagg cctcgggctc 721 tgagcggcct tggcccttct ccaccaaccc ctgccctaca ctcaggggga ggcggcgggg 781 ggcacacagg gtgggggcgg gtggggggct gctgggtgag cagcactcgc ctgcctggat 841 tgaaacccag agatggaggt gctgggaggg gctgtgagag ctcagccctg taaccaggcc 901 ttgccggagc cactgatgcc cggtcttctg tgcctttact ccaaacaccc cccagcccaa 961 gccacccact tgttctcaag tctgaagaag cccctcaccc ctctactcca ggctgtgttc 1021 agggcttggg gctggtggag ggaggggcct gaaattccag tgtgaaaggc tgagatgggc 1081 ccgaggcccc tggcctatgt ccaagccatt tcccctctca ccagcctctc cctggggagc 1141 cagtcagcta ggaaggaatg agggctcccc aggcccaccc ccagttcctg agctcatctg 1201 ggctgcaggg ctggcgggac agcagcgtgg actcagtctc ctagggattt cccaactctc 1261 ccgcccgctt gctgcatctg gacaccctgc ctcaggccct catctccact ggtcagcagg 1321 tgacctttgc ccagcgccct gggtcctcag tgcctgctgc cctggagatg atataaaaca 1381 ggtcagaacc ctcctgcctg tctgctcagt tcatccctag aggcagctgc tccaggtaat 1441 gccctctggg gaggggaaag aggaggggag gaggatgaag aggggcaaga ggagctccct 1501 gcccagccca gccagcaagc ctggagaagc acttgctaga gctaaggaag cctcggagct 1561 ggacgggtgc cccccacccc tcatcataac ctgaagaaca tggaggcccg ggaggggtgt 1621 cacttgccca aagctacata gggggtgggg ctggaagtgg ctccaagtgc aggttccccc 1681 ctcattcttc aggcttaggg ctggaggaag ccttagacag cccagtccta ccccagacag 1741 ggaaactgag gcctggagag ggccagaaat cacccaaaga cacacagcat gttggctgga 1801 ctggacggag atcagtccag accgcaggtg ccttgatgtt cagtctggtg ggttttctgc 1861 tccatcccac ccacctccct ttgggcctcg atccctcgcc gctcaccagt cccccttctg 1921 agagcccgta tgagcaggga gccggcccct actccttctg gcagacccag ctaaggttct 1981 accttagggg ccacgccacc tccccaggga ggggtccaga ggcatgggga cctggggtgc 2041 ccctcacagg acacttcctt gcaggaacag aggtgccatg cagccccggg tactccttgt 2101 tgttgccctc ctggcgctcc tggcctctgc ccgtaagcac ttggtgggac tgggctgggg 2161 gcagggtgga ggcaacttgg ggatcccagt cccaatgggt ggtcaagcag gagcccaggg 2221 ctcgtccaga ggccgatcca ccccactcag ccctgctctt tcctcaggag cttcagaggc 2281 cgaggatgcc tcccttctca gcttcatgca gggctacatg aagcacgcca ccaagaccgc 2341 caaggatgca ctgagcagcg tgcaggagtc ccaggtggcc cagcaggcca ggtacacccg 2401 ctggcctccc tccccatccc ccctgccagc tgcctccatt cccacccgcc cctgccctgg 2461 tgagatccca acaatggaat ggaggtgctc cagcctcccc tgggcctgtg cctcttcagc 2521 ctcctctttc ctcacagggc ctttgtcagg ctgctgcggg agagatgaca gagttgagac 2581 tgcattcctc ccaggtccct cctttctccc cggagcagtc ctagggcgcg ccgttttagc 2641 cctcatttcc attttccttt cctttccctt tctttctctt tctatttctt tctttctttc 2701 tttctttctt tctttctttc tttctttctt tctttctttc tttctttctt tcctttcttt 2761 ctttcttttc ttctttcttt ctttcctttc tttctctttc tttctttctt tctttccttt 2821 ttctttcttt ccctctcttc ctttctctct ttctttcttc ttcttttttt tttaatggag 2881 tctccctctg tcacccaggc tggagtgcag tggtgccatc tcggctcact gcaacctccg 2941 tctcccgggt tcaacccatt ctcctgcctc agcctcccaa gtagctggga ttacaggcac 3001 gcgccaccac acccagctaa tttttgtatt tttagcagag atggggtttc accatgttgg 3061 ccaggttggt cttgaattcc tgacctcagg ggatcctcct gcctcggcct cccaaagtgc 3121 tgggattaca ggcacgagcc actgcgcctg gccccatttt ccttttctga aggtctggct 3181 agagcagtgg tcctcagcct ttttggcacc agggaccagt tttgtggtgg acaatttttc 3241 catgggccag cggggatggt tttgggatga agctgttcca cctcagatca tcaggcatta 3301 gattctcata aggagccctc cacctagatc cctggcatgt gcagttcaca atagggttca 3361 cactcctatg agaatgtaag gccacttgat ctgacaggag gcggagctca ggcggtattg 3421 ctcactcacc caccactcac ttcgtgctgt gcagcccggc tcctaacagt ccatggacca 3481 gtacctatct atgacttggg ggttggggac ccctgggcta ggggtttgcc ttgggaggcc 3541 ccacctgacc caattcaagc ccgtgagtgc ttctgctttg ttctaagacc tggggccagt 3601 gtgagcagaa gtgtgtcctt cctctcccat cctgcccctg cccatcagta ctctcctctc 3661 ccctactccc ttctccacct caccctgact ggcattagct ggcatagcag aggtgttcat 3721 aaacattctt agtccccaga accggctttg gggtaggtgt tattttctca ctttgcagat 3781 gagaaaattg aggctcagag cgattaggtg acctgcccca gatcacacaa ctaatcaatc 3841 ctccaatgac tttccaaatg agaggctgcc tccctctgtc ctaccctgct cagagccacc 3901 aggttgtgca actccaggtg gtgctgtttg cacagaaaac aatgacagcc ttgacctttc 3961 acatctcccc accctgtcac tttgtgcctc aggcccaggg gcataaacat ctgaggtgac 4021 ctggagatgg cagggtttga cttgtgctgg ggttcctgca aggatatctc ttctcccagg 4081 gtggcagctg tgggggattc ctgcctgagg tctcagggct gtcgtccagt gaagttgaga 4141 gggtggtgtg gtcctgactg gtgtcgtcca gtggggacat gggtgtgggt cccatggttg 4201 cctacagagg agttctcatg ccctgctctg ttgcttcccc tgactgattt aggggctggg 4261 tgaccgatgg cttcagttcc ctgaaagact actggagcac cgttaaggac aagttctctg 4321 agttctggga tttggaccct gaggtcagac caacttcagc cgtggctgcc tgagacctca 4381 ataccccaag tccacctgcc tatccatcct gccagctcct tgggtcctgc aatctccagg 4441 gctgcccctg taggttgctt aaaagggaca gtattctcag tgctctccta ccccacctca 4501 tgcctggccc ccctccaggc atgctggcct cccaataaag ctggacaaga agctgctatg 4561 agtgggccgt cgcaagtgtg ccatctgtgt ctgggcatgg gaaagggccg aggctgttct 4621 gtgggtgggc actggacaga ctccaggtca ggcaggcatg gaggccagcg ctctatccac 4681 cttctggtag ctgggcagtc tctgggcctc agtttcttca tctctaaggt aggaatcacc 4741 ctccg //